DMLR: Data-centric Machine Learning Research -- Past, Present and Future

Drawing from discussions at the inaugural DMLR workshop at ICML 2023 and meetings prior, in this report we outline the relevance of community engagement and infrastructure development for the creation of next-generation public datasets that will advance machine learning science. We chart a path forward as a collective effort to sustain the creation and maintenance of these datasets and methods towards positive scientific, societal and business impact.

A PAC-Bayesian Perspective on the Interpolating Information Criterion

Deep learning is renowned for its theory-practice gap, whereby principled theory typically fails to provide much beneficial guidance for implementation in practice. This has been highlighted recently by the benign overfitting phenomenon: when neural networks become sufficiently large to interpolate the dataset perfectly, model performance appears to improve with increasing model size, in apparent contradiction with the well-known bias-variance tradeoff. While such phenomena have proven challenging to theoretically study for general models, the recently proposed Interpolating Information Criterion (IIC) provides a valuable theoretical framework to examine performance for overparameterized models. Using the IIC, a PAC-Bayes bound is obtained for a general class of models, characterizing factors which influence generalization performance in the interpolating regime. From the provided bound, we quantify how the test error for overparameterized models achieving effectively zero training error depends on the quality of the implicit regularization imposed by e.g. the combination of model, optimizer, and parameter-initialization scheme; the spectrum of the empirical neural tangent kernel; curvature of the loss landscape; and noise present in the data.

Equation Discovery with Bayesian Spike-and-Slab Priors and Efficient Kernels

Discovering governing equations from data is important to many scientific and engineering applications. Despite promising successes, existing methods are still challenged by data sparsity as well as noise issues, both of which are ubiquitous in practice. Moreover, state-of-the-art methods lack uncertainty quantification and/or are costly in training. To overcome these limitations, we propose a novel equation discovery method based on Kernel learning and BAyesian Spike-and-Slab priors (KBASS). We use kernel regression to estimate the target function, which is flexible, expressive, and more robust to data sparsity and noises. We combine it with a Bayesian spike-and-slab prior -- an ideal Bayesian sparse distribution -- for effective operator selection and uncertainty quantification. We develop an expectation propagation expectation-maximization (EP-EM) algorithm for efficient posterior inference and function estimation. To overcome the computational challenge of kernel regression, we place the function values on a mesh and induce a Kronecker product construction, and we use tensor algebra methods to enable efficient computation and optimization. We show the significant advantages of KBASS on a list of benchmark ODE and PDE discovery tasks.

Generative Modeling of Regular and Irregular Time Series Data via Koopman VAEs

Generating realistic time series data is important for many engineering and scientific applications. Existing work tackles this problem using generative adversarial networks (GANs). However, GANs are often unstable during training, and they can suffer from mode collapse. While variational autoencoders (VAEs) are known to be more robust to these issues, they are (surprisingly) less often considered for time series generation. In this work, we introduce Koopman VAE (KVAE), a new generative framework that is based on a novel design for the model prior, and that can be optimized for either regular and irregular training data. Inspired by Koopman theory, we represent the latent conditional prior dynamics using a linear map. Our approach enhances generative modeling with two desired features: (i) incorporating domain knowledge can be achieved by leverageing spectral tools that prescribe constraints on the eigenvalues of the linear map; and (ii) studying the qualitative behavior and stablity of the system can be performed using tools from dynamical systems theory. Our results show that KVAE outperforms state-of-the-art GAN and VAE methods across several challenging synthetic and real-world time series generation benchmarks. Whether trained on regular or irregular data, KVAE generates time series that improve both discriminative and predictive metrics. We also present visual evidence suggesting that KVAE learns probability density functions that better approximate empirical ground truth distributions.

Robustifying State-space Models for Long Sequences via Approximate Diagonalization

State-space models (SSMs) have recently emerged as a framework for learning long-range sequence tasks. An example is the structured state-space sequence (S4) layer, which uses the diagonal-plus-low-rank structure of the HiPPO initialization framework. However, the complicated structure of the S4 layer poses challenges; and, in an effort to address these challenges, models such as S4D and S5 have considered a purely diagonal structure. This choice simplifies the implementation, improves computational efficiency, and allows channel communication. However, diagonalizing the HiPPO framework is itself an ill-posed problem. In this paper, we propose a general solution for this and related ill-posed diagonalization problems in machine learning. We introduce a generic, backward-stable "perturb-then-diagonalize" (PTD) methodology, which is based on the pseudospectral theory of non-normal operators, and which may be interpreted as the approximate diagonalization of the non-normal matrices defining SSMs. Based on this, we introduce the S4-PTD and S5-PTD models. Through theoretical analysis of the transfer functions of different initialization schemes, we demonstrate that the S4-PTD/S5-PTD initialization strongly converges to the HiPPO framework, while the S4D/S5 initialization only achieves weak convergences. As a result, our new models show resilience to Fourier-mode noise-perturbed inputs, a crucial property not achieved by the S4D/S5 models. In addition to improved robustness, our S5-PTD model averages 87.6% accuracy on the Long-Range Arena benchmark, demonstrating that the PTD methodology helps to improve the accuracy of deep learning models.

Surrogate-based Autotuning for Randomized Sketching Algorithms in Regression Problems

Algorithms from Randomized Numerical Linear Algebra (RandNLA) are known to be effective in handling high-dimensional computational problems, providing high-quality empirical performance as well as strong probabilistic guarantees. However, their practical application is complicated by the fact that the user needs to set various algorithm-specific tuning parameters which are different than those used in traditional NLA. This paper demonstrates how a surrogate-based autotuning approach can be used to address fundamental problems of parameter selection in RandNLA algorithms. In particular, we provide a detailed investigation of surrogate-based autotuning for sketch-and-precondition (SAP) based randomized least squares methods, which have been one of the great success stories in modern RandNLA. Empirical results show that our surrogate-based autotuning approach can achieve near-optimal performance with much less tuning cost than a random search (up to about 4x fewer trials of different parameter configurations). Moreover, while our experiments focus on least squares, our results demonstrate a general-purpose autotuning pipeline applicable to any kind of RandNLA algorithm.

Probabilistic Forecasting with Coherent Aggregation

Obtaining accurate probabilistic forecasts while respecting hierarchical information is an important operational challenge in many applications, perhaps most obviously in energy management, supply chain planning, and resource allocation. The basic challenge, especially for multivariate forecasting, is that forecasts are often required to be coherent with respect to the hierarchical structure. In this paper, we propose a new model which leverages a factor model structure to produce coherent forecasts by construction. This is a consequence of a simple (exchangeability) observation: permuting \textit{}base-level series in the hierarchy does not change their aggregates. Our model uses a convolutional neural network to produce parameters for the factors, their loadings and base-level distributions; it produces samples which can be differentiated with respect to the model's parameters; and it can therefore optimize for any sample-based loss function, including the Continuous Ranked Probability Score and quantile losses. We can choose arbitrary continuous distributions for the factor and the base-level distributions. We compare our method to two previous methods which can be optimized end-to-end, while enforcing coherent aggregation. Our model achieves significant improvements: between $11.8-41.4\%$ on three hierarchical forecasting datasets. We also analyze the influence of parameters in our model with respect to base-level distribution and number of factors.

The Interpolating Information Criterion for Overparameterized Models

The problem of model selection is considered for the setting of interpolating estimators, where the number of model parameters exceeds the size of the dataset. Classical information criteria typically consider the large-data limit, penalizing model size. However, these criteria are not appropriate in modern settings where overparameterized models tend to perform well. For any overparameterized model, we show that there exists a dual underparameterized model that possesses the same marginal likelihood, thus establishing a form of Bayesian duality. This enables more classical methods to be used in the overparameterized setting, revealing the Interpolating Information Criterion, a measure of model quality that naturally incorporates the choice of prior into the model selection. Our new information criterion accounts for prior misspecification, geometric and spectral properties of the model, and is numerically consistent with known empirical and theoretical behavior in this regime.

GEANN: Scalable Graph Augmentations for Multi-Horizon Time Series Forecasting

Encoder-decoder deep neural networks have been increasingly studied for multi-horizon time series forecasting, especially in real-world applications. However, to forecast accurately, these sophisticated models typically rely on a large number of time series examples with substantial history. A rapidly growing topic of interest is forecasting time series which lack sufficient historical data -- often referred to as the ``cold start'' problem. In this paper, we introduce a novel yet simple method to address this problem by leveraging graph neural networks (GNNs) as a data augmentation for enhancing the encoder used by such forecasters. These GNN-based features can capture complex inter-series relationships, and their generation process can be optimized end-to-end with the forecasting task. We show that our architecture can use either data-driven or domain knowledge-defined graphs, scaling to incorporate information from multiple very large graphs with millions of nodes. In our target application of demand forecasting for a large e-commerce retailer, we demonstrate on both a small dataset of 100K products and a large dataset with over 2 million products that our method improves overall performance over competitive baseline models. More importantly, we show that it brings substantially more gains to ``cold start'' products such as those newly launched or recently out-of-stock.

SuperBench: A Super-Resolution Benchmark Dataset for Scientific Machine Learning

Super-Resolution (SR) techniques aim to enhance data resolution, enabling the retrieval of finer details, and improving the overall quality and fidelity of the data representation. There is growing interest in applying SR methods to complex spatiotemporal systems within the Scientific Machine Learning (SciML) community, with the hope of accelerating numerical simulations and/or improving forecasts in weather, climate, and related areas. However, the lack of standardized benchmark datasets for comparing and validating SR methods hinders progress and adoption in SciML. To address this, we introduce SuperBench, the first benchmark dataset featuring high-resolution datasets (up to $2048\times2048$ dimensions), including data from fluid flows, cosmology, and weather. Here, we focus on validating spatial SR performance from data-centric and physics-preserved perspectives, as well as assessing robustness to data degradation tasks. While deep learning-based SR methods (developed in the computer vision community) excel on certain tasks, despite relatively limited prior physics information, we identify limitations of these methods in accurately capturing intricate fine-scale features and preserving fundamental physical properties and constraints in scientific data. These shortcomings highlight the importance and subtlety of incorporating domain knowledge into ML models. We anticipate that SuperBench will significantly advance SR methods for scientific tasks.