Get our free extension to see links to code for papers anywhere online!

Chrome logo Add to Chrome

Firefox logo Add to Firefox

Picture for Markus Rempfler

The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference


Mar 04, 2021
Fabian Balsiger, Alain Jungo, Naren Akash R J, Jianan Chen, Ivan Ezhov, Shengnan Liu, Jun Ma, Johannes C. Paetzold, Vishva Saravanan R, Anjany Sekuboyina, Suprosanna Shit, Yannick Suter, Moshood Yekini, Guodong Zeng, Markus Rempfler


  Access Paper or Ask Questions

RDCNet: Instance segmentation with a minimalist recurrent residual network


Oct 02, 2020
Raphael Ortiz, Gustavo de Medeiros, Antoine H. F. M. Peters, Prisca Liberali, Markus Rempfler

* Accepted at MICCAI-MLMI 2020 workshop 

  Access Paper or Ask Questions

VerSe: A Vertebrae Labelling and Segmentation Benchmark


Jan 24, 2020
Anjany Sekuboyina, Amirhossein Bayat, Malek E. Husseini, Maximilian Löffler, Markus Rempfler, Jan Kukačka, Giles Tetteh, Alexander Valentinitsch, Christian Payer, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Stefan Zachowk, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Qingyue Wei, Kevin Brown, Matthias Wolf, Alexandre Kirszenberg, Élodie Puybareauq, Björn H. Menze, Jan S. Kirschke


  Access Paper or Ask Questions

Probabilistic Point Cloud Reconstructions for Vertebral Shape Analysis


Aug 02, 2019
Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Maximilian Loeffler, Jan S. Kirschke, Bjoern H. Menze

* Accepted at Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2019; JSK and BHM are joint supervising authors 

  Access Paper or Ask Questions

Adversarially Learning a Local Anatomical Prior: Vertebrae Labelling with 2D reformations


Mar 03, 2019
Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze

* Work under progress 

  Access Paper or Ask Questions

The Liver Tumor Segmentation Benchmark (LiTS)


Jan 13, 2019
Patrick Bilic, Patrick Ferdinand Christ, Eugene Vorontsov, Grzegorz Chlebus, Hao Chen, Qi Dou, Chi-Wing Fu, Xiao Han, Pheng-Ann Heng, Jürgen Hesser, Samuel Kadoury, Tomasz Konopczynski, Miao Le, Chunming Li, Xiaomeng Li, Jana Lipkovà, John Lowengrub, Hans Meine, Jan Hendrik Moltz, Chris Pal, Marie Piraud, Xiaojuan Qi, Jin Qi, Markus Rempfler, Karsten Roth, Andrea Schenk, Anjany Sekuboyina, Eugene Vorontsov, Ping Zhou, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Felix Gruen, Georgios Kaissis, Fabian Lohöfer, Rickmer Braren, Julian Holch, Felix Hofmann, Wieland Sommer, Volker Heinemann, Colin Jacobs, Gabriel Efrain Humpire Mamani, Bram van Ginneken, Gabriel Chartrand, An Tang, Michal Drozdzal, Avi Ben-Cohen, Eyal Klang, Marianne M. Amitai, Eli Konen, Hayit Greenspan, Johan Moreau, Alexandre Hostettler, Luc Soler, Refael Vivanti, Adi Szeskin, Naama Lev-Cohain, Jacob Sosna, Leo Joskowicz, Bjoern H. Menze

* conference 

  Access Paper or Ask Questions

Btrfly Net: Vertebrae Labelling with Energy-based Adversarial Learning of Local Spine Prior


Apr 04, 2018
Anjany Sekuboyina, Markus Rempfler, Jan Kukačka, Giles Tetteh, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze


  Access Paper or Ask Questions

Efficient Algorithms for Moral Lineage Tracing


Aug 25, 2017
Markus Rempfler, Jan-Hendrik Lange, Florian Jug, Corinna Blasse, Eugene W. Myers, Bjoern H. Menze, Bjoern Andres

* Accepted at ICCV 2017 

  Access Paper or Ask Questions

Deep-FExt: Deep Feature Extraction for Vessel Segmentation and Centerline Prediction


Apr 12, 2017
Giles Tetteh, Markus Rempfler, Bjoern H. Menze, Claus Zimmer

* Wang Q., Shi Y., Suk HI., Suzuki K. (eds) Machine Learning in Medical Imaging. MLMI 2017. Lecture Notes in Computer Science, vol 10541. Springer, Cham 
* 9 pages 

  Access Paper or Ask Questions

Automated Unsupervised Segmentation of Liver Lesions in CT scans via Cahn-Hilliard Phase Separation


Apr 07, 2017
Jana Lipková, Markus Rempfler, Patrick Christ, John Lowengrub, Bjoern H. Menze


  Access Paper or Ask Questions

Automatic Liver and Tumor Segmentation of CT and MRI Volumes using Cascaded Fully Convolutional Neural Networks


Feb 23, 2017
Patrick Ferdinand Christ, Florian Ettlinger, Felix Grün, Mohamed Ezzeldin A. Elshaera, Jana Lipkova, Sebastian Schlecht, Freba Ahmaddy, Sunil Tatavarty, Marc Bickel, Patrick Bilic, Markus Rempfler, Felix Hofmann, Melvin D Anastasi, Seyed-Ahmad Ahmadi, Georgios Kaissis, Julian Holch, Wieland Sommer, Rickmer Braren, Volker Heinemann, Bjoern Menze

* Under Review 

  Access Paper or Ask Questions

Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields


Oct 07, 2016
Patrick Ferdinand Christ, Mohamed Ezzeldin A. Elshaer, Florian Ettlinger, Sunil Tatavarty, Marc Bickel, Patrick Bilic, Markus Rempfler, Marco Armbruster, Felix Hofmann, Melvin D'Anastasi, Wieland H. Sommer, Seyed-Ahmad Ahmadi, Bjoern H. Menze

* Accepted at MICCAI 2016. Source code available on https://github.com/IBBM/Cascaded-FCN 

  Access Paper or Ask Questions

The Minimum Cost Connected Subgraph Problem in Medical Image Analysis


Jun 20, 2016
Markus Rempfler, Bjoern Andres, Bjoern H. Menze

* accepted at MICCAI 2016 

  Access Paper or Ask Questions