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Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient


Mar 10, 2021
Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze


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The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference


Mar 04, 2021
Fabian Balsiger, Alain Jungo, Naren Akash R J, Jianan Chen, Ivan Ezhov, Shengnan Liu, Jun Ma, Johannes C. Paetzold, Vishva Saravanan R, Anjany Sekuboyina, Suprosanna Shit, Yannick Suter, Moshood Yekini, Guodong Zeng, Markus Rempfler


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pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis


Oct 07, 2020
Alain Jungo, Olivier Scheidegger, Mauricio Reyes, Fabian Balsiger

* first and last author contributed equally 

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Learning Bloch Simulations for MR Fingerprinting by Invertible Neural Networks


Aug 10, 2020
Fabian Balsiger, Alain Jungo, Olivier Scheidegger, Benjamin Marty, Mauricio Reyes

* Accepted at MICCAI MLMIR 2020 

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Spatially Regularized Parametric Map Reconstruction for Fast Magnetic Resonance Fingerprinting


Nov 09, 2019
Fabian Balsiger, Alain Jungo, Olivier Scheidegger, Pierre G. Carlier, Mauricio Reyes, Benjamin Marty


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Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation


Jun 05, 2019
Fabian Balsiger, Yannick Soom, Olivier Scheidegger, Mauricio Reyes

* Accepted at MICCAI 2019 

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Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal Convolutional Neural Networks


Jul 24, 2018
Fabian Balsiger, Amaresha Shridhar Konar, Shivaprasad Chikop, Vimal Chandran, Olivier Scheidegger, Sairam Geethanath, Mauricio Reyes

* Accepted for Machine Learning for Medical Image Reconstruction (MLMIR) workshop at MICCAI 2018. The revision corrects Amaresha's last name and Section 2.1 (scanner type and flip angles) 

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