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Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient



Florian Kofler , Ivan Ezhov , Fabian Isensee , Fabian Balsiger , Christoph Berger , Maximilian Koerner , Johannes Paetzold , Hongwei Li , Suprosanna Shit , Richard McKinley , Spyridon Bakas , Claus Zimmer , Donna Ankerst , Jan Kirschke , Benedikt Wiestler , Bjoern H. Menze


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The MICCAI Hackathon on reproducibility, diversity, and selection of papers at the MICCAI conference



Fabian Balsiger , Alain Jungo , Naren Akash R J , Jianan Chen , Ivan Ezhov , Shengnan Liu , Jun Ma , Johannes C. Paetzold , Vishva Saravanan R , Anjany Sekuboyina , Suprosanna Shit , Yannick Suter , Moshood Yekini , Guodong Zeng , Markus Rempfler


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pymia: A Python package for data handling and evaluation in deep learning-based medical image analysis



Alain Jungo , Olivier Scheidegger , Mauricio Reyes , Fabian Balsiger

* first and last author contributed equally 

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Learning Bloch Simulations for MR Fingerprinting by Invertible Neural Networks



Fabian Balsiger , Alain Jungo , Olivier Scheidegger , Benjamin Marty , Mauricio Reyes

* Accepted at MICCAI MLMIR 2020 

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Spatially Regularized Parametric Map Reconstruction for Fast Magnetic Resonance Fingerprinting



Fabian Balsiger , Alain Jungo , Olivier Scheidegger , Pierre G. Carlier , Mauricio Reyes , Benjamin Marty


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Learning Shape Representation on Sparse Point Clouds for Volumetric Image Segmentation



Fabian Balsiger , Yannick Soom , Olivier Scheidegger , Mauricio Reyes

* Accepted at MICCAI 2019 

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Magnetic Resonance Fingerprinting Reconstruction via Spatiotemporal Convolutional Neural Networks



Fabian Balsiger , Amaresha Shridhar Konar , Shivaprasad Chikop , Vimal Chandran , Olivier Scheidegger , Sairam Geethanath , Mauricio Reyes

* Accepted for Machine Learning for Medical Image Reconstruction (MLMIR) workshop at MICCAI 2018. The revision corrects Amaresha's last name and Section 2.1 (scanner type and flip angles) 

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