Clustering for Protein Representation Learning

Protein representation learning is a challenging task that aims to capture the structure and function of proteins from their amino acid sequences. Previous methods largely ignored the fact that not all amino acids are equally important for protein folding and activity. In this article, we propose a neural clustering framework that can automatically discover the critical components of a protein by considering both its primary and tertiary structure information. Our framework treats a protein as a graph, where each node represents an amino acid and each edge represents a spatial or sequential connection between amino acids. We then apply an iterative clustering strategy to group the nodes into clusters based on their 1D and 3D positions and assign scores to each cluster. We select the highest-scoring clusters and use their medoid nodes for the next iteration of clustering, until we obtain a hierarchical and informative representation of the protein. We evaluate on four protein-related tasks: protein fold classification, enzyme reaction classification, gene ontology term prediction, and enzyme commission number prediction. Experimental results demonstrate that our method achieves state-of-the-art performance.

EVA: Zero-shot Accurate Attributes and Multi-Object Video Editing

Current diffusion-based video editing primarily focuses on local editing (\textit{e.g.,} object/background editing) or global style editing by utilizing various dense correspondences. However, these methods often fail to accurately edit the foreground and background simultaneously while preserving the original layout. We find that the crux of the issue stems from the imprecise distribution of attention weights across designated regions, including inaccurate text-to-attribute control and attention leakage. To tackle this issue, we introduce EVA, a \textbf{zero-shot} and \textbf{multi-attribute} video editing framework tailored for human-centric videos with complex motions. We incorporate a Spatial-Temporal Layout-Guided Attention mechanism that leverages the intrinsic positive and negative correspondences of cross-frame diffusion features. To avoid attention leakage, we utilize these correspondences to boost the attention scores of tokens within the same attribute across all video frames while limiting interactions between tokens of different attributes in the self-attention layer. For precise text-to-attribute manipulation, we use discrete text embeddings focused on specific layout areas within the cross-attention layer. Benefiting from the precise attention weight distribution, EVA can be easily generalized to multi-object editing scenarios and achieves accurate identity mapping. Extensive experiments demonstrate EVA achieves state-of-the-art results in real-world scenarios. Full results are provided at https://knightyxp.github.io/EVA/

ProtChatGPT: Towards Understanding Proteins with Large Language Models

Protein research is crucial in various fundamental disciplines, but understanding their intricate structure-function relationships remains challenging. Recent Large Language Models (LLMs) have made significant strides in comprehending task-specific knowledge, suggesting the potential for ChatGPT-like systems specialized in protein to facilitate basic research. In this work, we introduce ProtChatGPT, which aims at learning and understanding protein structures via natural languages. ProtChatGPT enables users to upload proteins, ask questions, and engage in interactive conversations to produce comprehensive answers. The system comprises protein encoders, a Protein-Language Pertaining Transformer (PLP-former), a projection adapter, and an LLM. The protein first undergoes protein encoders and PLP-former to produce protein embeddings, which are then projected by the adapter to conform with the LLM. The LLM finally combines user questions with projected embeddings to generate informative answers. Experiments show that ProtChatGPT can produce promising responses to proteins and their corresponding questions. We hope that ProtChatGPT could form the basis for further exploration and application in protein research. Code and our pre-trained model will be publicly available.

HeadStudio: Text to Animatable Head Avatars with 3D Gaussian Splatting

Creating digital avatars from textual prompts has long been a desirable yet challenging task. Despite the promising outcomes obtained through 2D diffusion priors in recent works, current methods face challenges in achieving high-quality and animated avatars effectively. In this paper, we present $\textbf{HeadStudio}$, a novel framework that utilizes 3D Gaussian splatting to generate realistic and animated avatars from text prompts. Our method drives 3D Gaussians semantically to create a flexible and achievable appearance through the intermediate FLAME representation. Specifically, we incorporate the FLAME into both 3D representation and score distillation: 1) FLAME-based 3D Gaussian splatting, driving 3D Gaussian points by rigging each point to a FLAME mesh. 2) FLAME-based score distillation sampling, utilizing FLAME-based fine-grained control signal to guide score distillation from the text prompt. Extensive experiments demonstrate the efficacy of HeadStudio in generating animatable avatars from textual prompts, exhibiting visually appealing appearances. The avatars are capable of rendering high-quality real-time ($\geq 40$ fps) novel views at a resolution of 1024. They can be smoothly controlled by real-world speech and video. We hope that HeadStudio can advance digital avatar creation and that the present method can widely be applied across various domains.

Hand-Centric Motion Refinement for 3D Hand-Object Interaction via Hierarchical Spatial-Temporal Modeling

Hands are the main medium when people interact with the world. Generating proper 3D motion for hand-object interaction is vital for applications such as virtual reality and robotics. Although grasp tracking or object manipulation synthesis can produce coarse hand motion, this kind of motion is inevitably noisy and full of jitter. To address this problem, we propose a data-driven method for coarse motion refinement. First, we design a hand-centric representation to describe the dynamic spatial-temporal relation between hands and objects. Compared to the object-centric representation, our hand-centric representation is straightforward and does not require an ambiguous projection process that converts object-based prediction into hand motion. Second, to capture the dynamic clues of hand-object interaction, we propose a new architecture that models the spatial and temporal structure in a hierarchical manner. Extensive experiments demonstrate that our method outperforms previous methods by a noticeable margin.

DocMSU: A Comprehensive Benchmark for Document-level Multimodal Sarcasm Understanding

Multimodal Sarcasm Understanding (MSU) has a wide range of applications in the news field such as public opinion analysis and forgery detection. However, existing MSU benchmarks and approaches usually focus on sentence-level MSU. In document-level news, sarcasm clues are sparse or small and are often concealed in long text. Moreover, compared to sentence-level comments like tweets, which mainly focus on only a few trends or hot topics (e.g., sports events), content in the news is considerably diverse. Models created for sentence-level MSU may fail to capture sarcasm clues in document-level news. To fill this gap, we present a comprehensive benchmark for Document-level Multimodal Sarcasm Understanding (DocMSU). Our dataset contains 102,588 pieces of news with text-image pairs, covering 9 diverse topics such as health, business, etc. The proposed large-scale and diverse DocMSU significantly facilitates the research of document-level MSU in real-world scenarios. To take on the new challenges posed by DocMSU, we introduce a fine-grained sarcasm comprehension method to properly align the pixel-level image features with word-level textual features in documents. Experiments demonstrate the effectiveness of our method, showing that it can serve as a baseline approach to the challenging DocMSU. Our code and dataset are available at https://github.com/Dulpy/DocMSU.

A Reliable Representation with Bidirectional Transition Model for Visual Reinforcement Learning Generalization

Visual reinforcement learning has proven effective in solving control tasks with high-dimensional observations. However, extracting reliable and generalizable representations from vision-based observations remains a central challenge. Inspired by the human thought process, when the representation extracted from the observation can predict the future and trace history, the representation is reliable and accurate in comprehending the environment. Based on this concept, we introduce a Bidirectional Transition (BiT) model, which leverages the ability to bidirectionally predict environmental transitions both forward and backward to extract reliable representations. Our model demonstrates competitive generalization performance and sample efficiency on two settings of the DeepMind Control suite. Additionally, we utilize robotic manipulation and CARLA simulators to demonstrate the wide applicability of our method.

FlowZero: Zero-Shot Text-to-Video Synthesis with LLM-Driven Dynamic Scene Syntax

Text-to-video (T2V) generation is a rapidly growing research area that aims to translate the scenes, objects, and actions within complex video text into a sequence of coherent visual frames. We present FlowZero, a novel framework that combines Large Language Models (LLMs) with image diffusion models to generate temporally-coherent videos. FlowZero uses LLMs to understand complex spatio-temporal dynamics from text, where LLMs can generate a comprehensive dynamic scene syntax (DSS) containing scene descriptions, object layouts, and background motion patterns. These elements in DSS are then used to guide the image diffusion model for video generation with smooth object motions and frame-to-frame coherence. Moreover, FlowZero incorporates an iterative self-refinement process, enhancing the alignment between the spatio-temporal layouts and the textual prompts for the videos. To enhance global coherence, we propose enriching the initial noise of each frame with motion dynamics to control the background movement and camera motion adaptively. By using spatio-temporal syntaxes to guide the diffusion process, FlowZero achieves improvement in zero-shot video synthesis, generating coherent videos with vivid motion.

Prior-Free Continual Learning with Unlabeled Data in the Wild

Continual Learning (CL) aims to incrementally update a trained model on new tasks without forgetting the acquired knowledge of old ones. Existing CL methods usually reduce forgetting with task priors, \ie using task identity or a subset of previously seen samples for model training. However, these methods would be infeasible when such priors are unknown in real-world applications. To address this fundamental but seldom-studied problem, we propose a Prior-Free Continual Learning (PFCL) method, which learns new tasks without knowing the task identity or any previous data. First, based on a fixed single-head architecture, we eliminate the need for task identity to select the task-specific output head. Second, we employ a regularization-based strategy for consistent predictions between the new and old models, avoiding revisiting previous samples. However, using this strategy alone often performs poorly in class-incremental scenarios, particularly for a long sequence of tasks. By analyzing the effectiveness and limitations of conventional regularization-based methods, we propose enhancing model consistency with an auxiliary unlabeled dataset additionally. Moreover, since some auxiliary data may degrade the performance, we further develop a reliable sample selection strategy to obtain consistent performance improvement. Extensive experiments on multiple image classification benchmark datasets show that our PFCL method significantly mitigates forgetting in all three learning scenarios. Furthermore, when compared to the most recent rehearsal-based methods that replay a limited number of previous samples, PFCL achieves competitive accuracy. Our code is available at: https://github.com/visiontao/pfcl

Point Contrastive Prediction with Semantic Clustering for Self-Supervised Learning on Point Cloud Videos

We propose a unified point cloud video self-supervised learning framework for object-centric and scene-centric data. Previous methods commonly conduct representation learning at the clip or frame level and cannot well capture fine-grained semantics. Instead of contrasting the representations of clips or frames, in this paper, we propose a unified self-supervised framework by conducting contrastive learning at the point level. Moreover, we introduce a new pretext task by achieving semantic alignment of superpoints, which further facilitates the representations to capture semantic cues at multiple scales. In addition, due to the high redundancy in the temporal dimension of dynamic point clouds, directly conducting contrastive learning at the point level usually leads to massive undesired negatives and insufficient modeling of positive representations. To remedy this, we propose a selection strategy to retain proper negatives and make use of high-similarity samples from other instances as positive supplements. Extensive experiments show that our method outperforms supervised counterparts on a wide range of downstream tasks and demonstrates the superior transferability of the learned representations.