Causality-aware Visual Scene Discovery for Cross-Modal Question Reasoning

Existing visual question reasoning methods usually fail to explicitly discover the inherent causal mechanism and ignore the complex event-level understanding that requires jointly modeling cross-modal event temporality and causality. In this paper, we propose an event-level visual question reasoning framework named Cross-Modal Question Reasoning (CMQR), to explicitly discover temporal causal structure and mitigate visual spurious correlation by causal intervention. To explicitly discover visual causal structure, the Visual Causality Discovery (VCD) architecture is proposed to find question-critical scene temporally and disentangle the visual spurious correlations by attention-based front-door causal intervention module named Local-Global Causal Attention Module (LGCAM). To align the fine-grained interactions between linguistic semantics and spatial-temporal representations, we build an Interactive Visual-Linguistic Transformer (IVLT) that builds the multi-modal co-occurrence interactions between visual and linguistic content. Extensive experiments on four datasets demonstrate the superiority of CMQR for discovering visual causal structures and achieving robust question reasoning.

Urban Regional Function Guided Traffic Flow Prediction

The prediction of traffic flow is a challenging yet crucial problem in spatial-temporal analysis, which has recently gained increasing interest. In addition to spatial-temporal correlations, the functionality of urban areas also plays a crucial role in traffic flow prediction. However, the exploration of regional functional attributes mainly focuses on adding additional topological structures, ignoring the influence of functional attributes on regional traffic patterns. Different from the existing works, we propose a novel module named POI-MetaBlock, which utilizes the functionality of each region (represented by Point of Interest distribution) as metadata to further mine different traffic characteristics in areas with different functions. Specifically, the proposed POI-MetaBlock employs a self-attention architecture and incorporates POI and time information to generate dynamic attention parameters for each region, which enables the model to fit different traffic patterns of various areas at different times. Furthermore, our lightweight POI-MetaBlock can be easily integrated into conventional traffic flow prediction models. Extensive experiments demonstrate that our module significantly improves the performance of traffic flow prediction and outperforms state-of-the-art methods that use metadata.

Visual-Linguistic Causal Intervention for Radiology Report Generation

Automatic radiology report generation is essential for computer-aided diagnosis and medication guidance. Importantly, automatic radiology report generation (RRG) can relieve the heavy burden of radiologists by generating medical reports automatically from visual-linguistic data relations. However, due to the spurious correlations within image-text data induced by visual and linguistic biases, it is challenging to generate accurate reports that reliably describe abnormalities. Besides, the cross-modal confounder is usually unobservable and difficult to be eliminated explicitly. In this paper, we mitigate the cross-modal data bias for RRG from a new perspective, i.e., visual-linguistic causal intervention, and propose a novel Visual-Linguistic Causal Intervention (VLCI) framework for RRG, which consists of a visual deconfounding module (VDM) and a linguistic deconfounding module (LDM), to implicitly deconfound the visual-linguistic confounder by causal front-door intervention. Specifically, the VDM explores and disentangles the visual confounder from the patch-based local and global features without object detection due to the absence of universal clinic semantic extraction. Simultaneously, the LDM eliminates the linguistic confounder caused by salient visual features and high-frequency context without constructing specific dictionaries. Extensive experiments on IU-Xray and MIMIC-CXR datasets show that our VLCI outperforms the state-of-the-art RRG methods significantly. Source code and models are available at https://github.com/WissingChen/VLCI.

Structure Embedded Nucleus Classification for Histopathology Images

Nuclei classification provides valuable information for histopathology image analysis. However, the large variations in the appearance of different nuclei types cause difficulties in identifying nuclei. Most neural network based methods are affected by the local receptive field of convolutions, and pay less attention to the spatial distribution of nuclei or the irregular contour shape of a nucleus. In this paper, we first propose a novel polygon-structure feature learning mechanism that transforms a nucleus contour into a sequence of points sampled in order, and employ a recurrent neural network that aggregates the sequential change in distance between key points to obtain learnable shape features. Next, we convert a histopathology image into a graph structure with nuclei as nodes, and build a graph neural network to embed the spatial distribution of nuclei into their representations. To capture the correlations between the categories of nuclei and their surrounding tissue patterns, we further introduce edge features that are defined as the background textures between adjacent nuclei. Lastly, we integrate both polygon and graph structure learning mechanisms into a whole framework that can extract intra and inter-nucleus structural characteristics for nuclei classification. Experimental results show that the proposed framework achieves significant improvements compared to the state-of-the-art methods.

Towards Unifying Medical Vision-and-Language Pre-training via Soft Prompts

Medical vision-and-language pre-training (Med-VLP) has shown promising improvements on many downstream medical tasks owing to its applicability to extracting generic representations from medical images and texts. Practically, there exist two typical types, \textit{i.e.}, the fusion-encoder type and the dual-encoder type, depending on whether a heavy fusion module is used. The former is superior at multi-modal tasks owing to the sufficient interaction between modalities; the latter is good at uni-modal and cross-modal tasks due to the single-modality encoding ability. To take advantage of these two types, we propose an effective yet straightforward scheme named PTUnifier to unify the two types. We first unify the input format by introducing visual and textual prompts, which serve as a feature bank that stores the most representative images/texts. By doing so, a single model could serve as a \textit{foundation model} that processes various tasks adopting different input formats (\textit{i.e.}, image-only, text-only, and image-text-pair). Furthermore, we construct a prompt pool (instead of static ones) to improve diversity and scalability. Experimental results show that our approach achieves state-of-the-art results on a broad range of tasks, spanning uni-modal tasks (\textit{i.e.}, image/text classification and text summarization), cross-modal tasks (\textit{i.e.}, image-to-text generation and image-text/text-image retrieval), and multi-modal tasks (\textit{i.e.}, visual question answering), demonstrating the effectiveness of our approach. Note that the adoption of prompts is orthogonal to most existing Med-VLP approaches and could be a beneficial and complementary extension to these approaches.

Self-Supervised Correction Learning for Semi-Supervised Biomedical Image Segmentation

Biomedical image segmentation plays a significant role in computer-aided diagnosis. However, existing CNN based methods rely heavily on massive manual annotations, which are very expensive and require huge human resources. In this work, we adopt a coarse-to-fine strategy and propose a self-supervised correction learning paradigm for semi-supervised biomedical image segmentation. Specifically, we design a dual-task network, including a shared encoder and two independent decoders for segmentation and lesion region inpainting, respectively. In the first phase, only the segmentation branch is used to obtain a relatively rough segmentation result. In the second step, we mask the detected lesion regions on the original image based on the initial segmentation map, and send it together with the original image into the network again to simultaneously perform inpainting and segmentation separately. For labeled data, this process is supervised by the segmentation annotations, and for unlabeled data, it is guided by the inpainting loss of masked lesion regions. Since the two tasks rely on similar feature information, the unlabeled data effectively enhances the representation of the network to the lesion regions and further improves the segmentation performance. Moreover, a gated feature fusion (GFF) module is designed to incorporate the complementary features from the two tasks. Experiments on three medical image segmentation datasets for different tasks including polyp, skin lesion and fundus optic disc segmentation well demonstrate the outstanding performance of our method compared with other semi-supervised approaches. The code is available at https://github.com/ReaFly/SemiMedSeg.

Lesion-aware Dynamic Kernel for Polyp Segmentation

Automatic and accurate polyp segmentation plays an essential role in early colorectal cancer diagnosis. However, it has always been a challenging task due to 1) the diverse shape, size, brightness and other appearance characteristics of polyps, 2) the tiny contrast between concealed polyps and their surrounding regions. To address these problems, we propose a lesion-aware dynamic network (LDNet) for polyp segmentation, which is a traditional u-shape encoder-decoder structure incorporated with a dynamic kernel generation and updating scheme. Specifically, the designed segmentation head is conditioned on the global context features of the input image and iteratively updated by the extracted lesion features according to polyp segmentation predictions. This simple but effective scheme endows our model with powerful segmentation performance and generalization capability. Besides, we utilize the extracted lesion representation to enhance the feature contrast between the polyp and background regions by a tailored lesion-aware cross-attention module (LCA), and design an efficient self-attention module (ESA) to capture long-range context relations, further improving the segmentation accuracy. Extensive experiments on four public polyp benchmarks and our collected large-scale polyp dataset demonstrate the superior performance of our method compared with other state-of-the-art approaches. The source code is available at https://github.com/ReaFly/LDNet.

Adaptive Context Selection for Polyp Segmentation

Accurate polyp segmentation is of great significance for the diagnosis and treatment of colorectal cancer. However, it has always been very challenging due to the diverse shape and size of polyp. In recent years, state-of-the-art methods have achieved significant breakthroughs in this task with the help of deep convolutional neural networks. However, few algorithms explicitly consider the impact of the size and shape of the polyp and the complex spatial context on the segmentation performance, which results in the algorithms still being powerless for complex samples. In fact, segmentation of polyps of different sizes relies on different local and global contextual information for regional contrast reasoning. To tackle these issues, we propose an adaptive context selection based encoder-decoder framework which is composed of Local Context Attention (LCA) module, Global Context Module (GCM) and Adaptive Selection Module (ASM). Specifically, LCA modules deliver local context features from encoder layers to decoder layers, enhancing the attention to the hard region which is determined by the prediction map of previous layer. GCM aims to further explore the global context features and send to the decoder layers. ASM is used for adaptive selection and aggregation of context features through channel-wise attention. Our proposed approach is evaluated on the EndoScene and Kvasir-SEG Datasets, and shows outstanding performance compared with other state-of-the-art methods. The code is available at https://github.com/ReaFly/ACSNet.

Which Pixel to Annotate: a Label-Efficient Nuclei Segmentation Framework

Recently deep neural networks, which require a large amount of annotated samples, have been widely applied in nuclei instance segmentation of H\&E stained pathology images. However, it is inefficient and unnecessary to label all pixels for a dataset of nuclei images which usually contain similar and redundant patterns. Although unsupervised and semi-supervised learning methods have been studied for nuclei segmentation, very few works have delved into the selective labeling of samples to reduce the workload of annotation. Thus, in this paper, we propose a novel full nuclei segmentation framework that chooses only a few image patches to be annotated, augments the training set from the selected samples, and achieves nuclei segmentation in a semi-supervised manner. In the proposed framework, we first develop a novel consistency-based patch selection method to determine which image patches are the most beneficial to the training. Then we introduce a conditional single-image GAN with a component-wise discriminator, to synthesize more training samples. Lastly, our proposed framework trains an existing segmentation model with the above augmented samples. The experimental results show that our proposed method could obtain the same-level performance as a fully-supervised baseline by annotating less than 5% pixels on some benchmarks.

BoxPolyp:Boost Generalized Polyp Segmentation Using Extra Coarse Bounding Box Annotations

Accurate polyp segmentation is of great importance for colorectal cancer diagnosis and treatment. However, due to the high cost of producing accurate mask annotations, existing polyp segmentation methods suffer from severe data shortage and impaired model generalization. Reversely, coarse polyp bounding box annotations are more accessible. Thus, in this paper, we propose a boosted BoxPolyp model to make full use of both accurate mask and extra coarse box annotations. In practice, box annotations are applied to alleviate the over-fitting issue of previous polyp segmentation models, which generate fine-grained polyp area through the iterative boosted segmentation model. To achieve this goal, a fusion filter sampling (FFS) module is firstly proposed to generate pixel-wise pseudo labels from box annotations with less noise, leading to significant performance improvements. Besides, considering the appearance consistency of the same polyp, an image consistency (IC) loss is designed. Such IC loss explicitly narrows the distance between features extracted by two different networks, which improves the robustness of the model. Note that our BoxPolyp is a plug-and-play model, which can be merged into any appealing backbone. Quantitative and qualitative experimental results on five challenging benchmarks confirm that our proposed model outperforms previous state-of-the-art methods by a large margin.