Seq vs Seq: An Open Suite of Paired Encoders and Decoders

The large language model (LLM) community focuses almost exclusively on decoder-only language models, since they are easier to use for text generation. However, a large subset of the community still uses encoder-only models for tasks such as classification or retrieval. Previous work has attempted to compare these architectures, but is forced to make comparisons with models that have different numbers of parameters, training techniques, and datasets. We introduce the SOTA open-data Ettin suite of models: paired encoder-only and decoder-only models ranging from 17 million parameters to 1 billion, trained on up to 2 trillion tokens. Using the same recipe for both encoder-only and decoder-only models produces SOTA recipes in both categories for their respective sizes, beating ModernBERT as an encoder and Llama 3.2 and SmolLM2 as decoders. Like previous work, we find that encoder-only models excel at classification and retrieval tasks while decoders excel at generative tasks. However, we show that adapting a decoder model to encoder tasks (and vice versa) through continued training is subpar compared to using only the reverse objective (i.e. a 400M encoder outperforms a 1B decoder on MNLI, and vice versa for generative tasks). We open-source all artifacts of this study including training data, training order segmented by checkpoint, and 200+ checkpoints to allow future work to analyze or extend all aspects of training.

How Grounded is Wikipedia? A Study on Structured Evidential Support

Wikipedia is a critical resource for modern NLP, serving as a rich repository of up-to-date and citation-backed information on a wide variety of subjects. The reliability of Wikipedia -- its groundedness in its cited sources -- is vital to this purpose. This work provides a quantitative analysis of the extent to which Wikipedia *is* so grounded and of how readily grounding evidence may be retrieved. To this end, we introduce PeopleProfiles -- a large-scale, multi-level dataset of claim support annotations on Wikipedia articles of notable people. We show that roughly 20% of claims in Wikipedia *lead* sections are unsupported by the article body; roughly 27% of annotated claims in the article *body* are unsupported by their (publicly accessible) cited sources; and >80% of lead claims cannot be traced to these sources via annotated body evidence. Further, we show that recovery of complex grounding evidence for claims that *are* supported remains a challenge for standard retrieval methods.

Jailbreak Distillation: Renewable Safety Benchmarking

Large language models (LLMs) are rapidly deployed in critical applications, raising urgent needs for robust safety benchmarking. We propose Jailbreak Distillation (JBDistill), a novel benchmark construction framework that "distills" jailbreak attacks into high-quality and easily-updatable safety benchmarks. JBDistill utilizes a small set of development models and existing jailbreak attack algorithms to create a candidate prompt pool, then employs prompt selection algorithms to identify an effective subset of prompts as safety benchmarks. JBDistill addresses challenges in existing safety evaluation: the use of consistent evaluation prompts across models ensures fair comparisons and reproducibility. It requires minimal human effort to rerun the JBDistill pipeline and produce updated benchmarks, alleviating concerns on saturation and contamination. Extensive experiments demonstrate our benchmarks generalize robustly to 13 diverse evaluation models held out from benchmark construction, including proprietary, specialized, and newer-generation LLMs, significantly outperforming existing safety benchmarks in effectiveness while maintaining high separability and diversity. Our framework thus provides an effective, sustainable, and adaptable solution for streamlining safety evaluation.

Rank-K: Test-Time Reasoning for Listwise Reranking

Retrieve-and-rerank is a popular retrieval pipeline because of its ability to make slow but effective rerankers efficient enough at query time by reducing the number of comparisons. Recent works in neural rerankers take advantage of large language models for their capability in reasoning between queries and passages and have achieved state-of-the-art retrieval effectiveness. However, such rerankers are resource-intensive, even after heavy optimization. In this work, we introduce Rank-K, a listwise passage reranking model that leverages the reasoning capability of the reasoning language model at query time that provides test time scalability to serve hard queries. We show that Rank-K improves retrieval effectiveness by 23\% over the RankZephyr, the state-of-the-art listwise reranker, when reranking a BM25 initial ranked list and 19\% when reranking strong retrieval results by SPLADE-v3. Since Rank-K is inherently a multilingual model, we found that it ranks passages based on queries in different languages as effectively as it does in monolingual retrieval.

Always Tell Me The Odds: Fine-grained Conditional Probability Estimation

We present a state-of-the-art model for fine-grained probability estimation of propositions conditioned on context. Recent advances in large language models (LLMs) have significantly enhanced their reasoning capabilities, particularly on well-defined tasks with complete information. However, LLMs continue to struggle with making accurate and well-calibrated probabilistic predictions under uncertainty or partial information. While incorporating uncertainty into model predictions often boosts performance, obtaining reliable estimates of that uncertainty remains understudied. In particular, LLM probability estimates tend to be coarse and biased towards more frequent numbers. Through a combination of human and synthetic data creation and assessment, scaling to larger models, and better supervision, we propose a set of strong and precise probability estimation models. We conduct systematic evaluations across tasks that rely on conditional probability estimation and show that our approach consistently outperforms existing fine-tuned and prompting-based methods by a large margin.

MICE for CATs: Model-Internal Confidence Estimation for Calibrating Agents with Tools

Tool-using agents that act in the world need to be both useful and safe. Well-calibrated model confidences can be used to weigh the risk versus reward of potential actions, but prior work shows that many models are poorly calibrated. Inspired by interpretability literature exploring the internals of models, we propose a novel class of model-internal confidence estimators (MICE) to better assess confidence when calling tools. MICE first decodes from each intermediate layer of the language model using logitLens and then computes similarity scores between each layer's generation and the final output. These features are fed into a learned probabilistic classifier to assess confidence in the decoded output. On the simulated trial and error (STE) tool-calling dataset using Llama3 models, we find that MICE beats or matches the baselines on smoothed expected calibration error. Using MICE confidences to determine whether to call a tool significantly improves over strong baselines on a new metric, expected tool-calling utility. Further experiments show that MICE is sample-efficient, can generalize zero-shot to unseen APIs, and results in higher tool-calling utility in scenarios with varying risk levels. Our code is open source, available at https://github.com/microsoft/mice_for_cats.

Certified Mitigation of Worst-Case LLM Copyright Infringement

The exposure of large language models (LLMs) to copyrighted material during pre-training raises concerns about unintentional copyright infringement post deployment. This has driven the development of "copyright takedown" methods, post-training approaches aimed at preventing models from generating content substantially similar to copyrighted ones. While current mitigation approaches are somewhat effective for average-case risks, we demonstrate that they overlook worst-case copyright risks exhibits by the existence of long, verbatim quotes from copyrighted sources. We propose BloomScrub, a remarkably simple yet highly effective inference-time approach that provides certified copyright takedown. Our method repeatedly interleaves quote detection with rewriting techniques to transform potentially infringing segments. By leveraging efficient data sketches (Bloom filters), our approach enables scalable copyright screening even for large-scale real-world corpora. When quotes beyond a length threshold cannot be removed, the system can abstain from responding, offering certified risk reduction. Experimental results show that BloomScrub reduces infringement risk, preserves utility, and accommodates different levels of enforcement stringency with adaptive abstention. Our results suggest that lightweight, inference-time methods can be surprisingly effective for copyright prevention.

Can LLMs Generate Tabular Summaries of Science Papers? Rethinking the Evaluation Protocol

Literature review tables are essential for summarizing and comparing collections of scientific papers. We explore the task of generating tables that best fulfill a user's informational needs given a collection of scientific papers. Building on recent work (Newman et al., 2024), we extend prior approaches to address real-world complexities through a combination of LLM-based methods and human annotations. Our contributions focus on three key challenges encountered in real-world use: (i) User prompts are often under-specified; (ii) Retrieved candidate papers frequently contain irrelevant content; and (iii) Task evaluation should move beyond shallow text similarity techniques and instead assess the utility of inferred tables for information-seeking tasks (e.g., comparing papers). To support reproducible evaluation, we introduce ARXIV2TABLE, a more realistic and challenging benchmark for this task, along with a novel approach to improve literature review table generation in real-world scenarios. Our extensive experiments on this benchmark show that both open-weight and proprietary LLMs struggle with the task, highlighting its difficulty and the need for further advancements. Our dataset and code are available at https://github.com/JHU-CLSP/arXiv2Table.

Bonsai: Interpretable Tree-Adaptive Grounded Reasoning

To develop general-purpose collaborative agents, humans need reliable AI systems that can (1) adapt to new domains and (2) transparently reason with uncertainty to allow for verification and correction. Black-box models demonstrate powerful data processing abilities but do not satisfy these criteria due to their opaqueness, domain specificity, and lack of uncertainty awareness. We introduce Bonsai, a compositional and probabilistic reasoning system that generates adaptable inference trees by retrieving relevant grounding evidence and using it to compute likelihoods of sub-claims derived from broader natural language inferences. Bonsai's reasoning power is tunable at test-time via evidence scaling and it demonstrates reliable handling of varied domains including transcripts, photographs, videos, audio, and databases. Question-answering and human alignment experiments demonstrate that Bonsai matches the performance of domain-specific black-box methods while generating interpretable, grounded, and uncertainty-aware reasoning traces.

SpectR: Dynamically Composing LM Experts with Spectral Routing

Training large, general-purpose language models poses significant challenges. The growing availability of specialized expert models, fine-tuned from pretrained models for specific tasks or domains, offers a promising alternative. Leveraging the potential of these existing expert models in real-world applications requires effective methods to select or merge the models best suited for a given task. This paper introduces SPECTR, an approach for dynamically composing expert models at each time step during inference. Notably, our method requires no additional training and enables flexible, token- and layer-wise model combinations. Our experimental results demonstrate that SPECTR improves routing accuracy over alternative training-free methods, increasing task performance across expert domains.