Advancing machine learning for MR image reconstruction with an open competition: Overview of the 2019 fastMRI challenge

Purpose: To advance research in the field of machine learning for MR image reconstruction with an open challenge. Methods: We provided participants with a dataset of raw k-space data from 1,594 consecutive clinical exams of the knee. The goal of the challenge was to reconstruct images from these data. In order to strike a balance between realistic data and a shallow learning curve for those not already familiar with MR image reconstruction, we ran multiple tracks for multi-coil and single-coil data. We performed a two-stage evaluation based on quantitative image metrics followed by evaluation by a panel of radiologists. The challenge ran from June to December of 2019. Results: We received a total of 33 challenge submissions. All participants chose to submit results from supervised machine learning approaches. Conclusion: The challenge led to new developments in machine learning for image reconstruction, provided insight into the current state of the art in the field, and highlighted remaining hurdles for clinical adoption.

End-to-end ASR: from Supervised to Semi-Supervised Learning with Modern Architectures

We study ResNet-, Time-Depth Separable ConvNets-, and Transformer-based acoustic models, trained with CTC or Seq2Seq criterions. We perform experiments on the LibriSpeech dataset, with and without LM decoding, optionally with beam rescoring. We reach 5.18% WER with external language models for decoding and rescoring. Additionally, we leverage the unlabeled data from LibriVox by doing semi-supervised training and show that it is possible to reach 5.29% WER on test-other without decoding, and 4.11% WER with decoding and rescoring, with only the standard 960 hours from LibriSpeech as labeled data.

RNN-T For Latency Controlled ASR With Improved Beam Search

Neural transducer-based systems such as RNN Transducers (RNN-T) for automatic speech recognition (ASR) blend the individual components of a traditional hybrid ASR systems (acoustic model, language model, punctuation model, inverse text normalization) into one single model. This greatly simplifies training and inference and hence makes RNN-T a desirable choice for ASR systems. In this work, we investigate use of RNN-T in applications that require a tune-able latency budget during inference time. We also improved the decoding speed of the originally proposed RNN-T beam search algorithm. We evaluated our proposed system on English videos ASR dataset and show that neural RNN-T models can achieve comparable WER and better computational efficiency compared to a well tuned hybrid ASR baseline.

GrappaNet: Combining Parallel Imaging with Deep Learning for Multi-Coil MRI Reconstruction

Magnetic Resonance Image (MRI) acquisition is an inherently slow process which has spurred the development of two different acceleration methods: acquiring multiple correlated samples simultaneously (parallel imaging) and acquiring fewer samples than necessary for traditional signal processing methods (compressed sensing). Both methods provide complementary approaches to accelerating the speed of MRI acquisition. In this paper, we present a novel method to integrate traditional parallel imaging methods into deep neural networks that is able to generate high quality reconstructions even for high acceleration factors. The proposed method, called GrappaNet, performs progressive reconstruction by first mapping the reconstruction problem to a simpler one that can be solved by a traditional parallel imaging methods using a neural network, followed by an application of a parallel imaging method, and finally fine-tuning the output with another neural network. The entire network can be trained end-to-end. We present experimental results on the recently released fastMRI dataset and show that GrappaNet can generate higher quality reconstructions than competing methods for both $4\times$ and $8\times$ acceleration.

fastMRI: An Open Dataset and Benchmarks for Accelerated MRI

Accelerating Magnetic Resonance Imaging (MRI) by taking fewer measurements has the potential to reduce medical costs, minimize stress to patients and make MRI possible in applications where it is currently prohibitively slow or expensive. We introduce the fastMRI dataset, a large-scale collection of both raw MR measurements and clinical MR images, that can be used for training and evaluation of machine-learning approaches to MR image reconstruction. By introducing standardized evaluation criteria and a freely-accessible dataset, our goal is to help the community make rapid advances in the state of the art for MR image reconstruction. We also provide a self-contained introduction to MRI for machine learning researchers with no medical imaging background.

Robust Speech Recognition Using Generative Adversarial Networks

This paper describes a general, scalable, end-to-end framework that uses the generative adversarial network (GAN) objective to enable robust speech recognition. Encoders trained with the proposed approach enjoy improved invariance by learning to map noisy audio to the same embedding space as that of clean audio. Unlike previous methods, the new framework does not rely on domain expertise or simplifying assumptions as are often needed in signal processing, and directly encourages robustness in a data-driven way. We show the new approach improves simulated far-field speech recognition of vanilla sequence-to-sequence models without specialized front-ends or preprocessing.

Cold Fusion: Training Seq2Seq Models Together with Language Models

Sequence-to-sequence (Seq2Seq) models with attention have excelled at tasks which involve generating natural language sentences such as machine translation, image captioning and speech recognition. Performance has further been improved by leveraging unlabeled data, often in the form of a language model. In this work, we present the Cold Fusion method, which leverages a pre-trained language model during training, and show its effectiveness on the speech recognition task. We show that Seq2Seq models with Cold Fusion are able to better utilize language information enjoying i) faster convergence and better generalization, and ii) almost complete transfer to a new domain while using less than 10% of the labeled training data.

Exploring Neural Transducers for End-to-End Speech Recognition

In this work, we perform an empirical comparison among the CTC, RNN-Transducer, and attention-based Seq2Seq models for end-to-end speech recognition. We show that, without any language model, Seq2Seq and RNN-Transducer models both outperform the best reported CTC models with a language model, on the popular Hub5'00 benchmark. On our internal diverse dataset, these trends continue - RNNTransducer models rescored with a language model after beam search outperform our best CTC models. These results simplify the speech recognition pipeline so that decoding can now be expressed purely as neural network operations. We also study how the choice of encoder architecture affects the performance of the three models - when all encoder layers are forward only, and when encoders downsample the input representation aggressively.

Reducing Bias in Production Speech Models

Replacing hand-engineered pipelines with end-to-end deep learning systems has enabled strong results in applications like speech and object recognition. However, the causality and latency constraints of production systems put end-to-end speech models back into the underfitting regime and expose biases in the model that we show cannot be overcome by "scaling up", i.e., training bigger models on more data. In this work we systematically identify and address sources of bias, reducing error rates by up to 20% while remaining practical for deployment. We achieve this by utilizing improved neural architectures for streaming inference, solving optimization issues, and employing strategies that increase audio and label modelling versatility.