An Analysis of the Adaptation Speed of Causal Models

We consider the problem of discovering the causal process that generated a collection of datasets. We assume that all these datasets were generated by unknown sparse interventions on a structural causal model (SCM) $G$, that we want to identify. Recently, Bengio et al. (2020) argued that among all SCMs, $G$ is the fastest to adapt from one dataset to another, and proposed a meta-learning criterion to identify the causal direction in a two-variable SCM. While the experiments were promising, the theoretical justification was incomplete. Our contribution is a theoretical investigation of the adaptation speed of simple two-variable SCMs. We use convergence rates from stochastic optimization to justify that a relevant proxy for adaptation speed is distance in parameter space after intervention. Using this proxy, we show that the SCM with the correct causal direction is advantaged for categorical and normal cause-effect datasets when the intervention is on the cause variable. When the intervention is on the effect variable, we provide a more nuanced picture which highlights that the fastest-to-adapt heuristic is not always valid. Code to reproduce experiments is available at https://github.com/remilepriol/causal-adaptation-speed

COVI White Paper

The SARS-CoV-2 (Covid-19) pandemic has caused significant strain on public health institutions around the world. Contact tracing is an essential tool to change the course of the Covid-19 pandemic. Manual contact tracing of Covid-19 cases has significant challenges that limit the ability of public health authorities to minimize community infections. Personalized peer-to-peer contact tracing through the use of mobile apps has the potential to shift the paradigm. Some countries have deployed centralized tracking systems, but more privacy-protecting decentralized systems offer much of the same benefit without concentrating data in the hands of a state authority or for-profit corporations. Machine learning methods can circumvent some of the limitations of standard digital tracing by incorporating many clues and their uncertainty into a more graded and precise estimation of infection risk. The estimated risk can provide early risk awareness, personalized recommendations and relevant information to the user. Finally, non-identifying risk data can inform epidemiological models trained jointly with the machine learning predictor. These models can provide statistical evidence for the importance of factors involved in disease transmission. They can also be used to monitor, evaluate and optimize health policy and (de)confinement scenarios according to medical and economic productivity indicators. However, such a strategy based on mobile apps and machine learning should proactively mitigate potential ethical and privacy risks, which could have substantial impacts on society (not only impacts on health but also impacts such as stigmatization and abuse of personal data). Here, we present an overview of the rationale, design, ethical considerations and privacy strategy of `COVI,' a Covid-19 public peer-to-peer contact tracing and risk awareness mobile application developed in Canada.

Exploiting Syntactic Structure for Better Language Modeling: A Syntactic Distance Approach

It is commonly believed that knowledge of syntactic structure should improve language modeling. However, effectively and computationally efficiently incorporating syntactic structure into neural language models has been a challenging topic. In this paper, we make use of a multi-task objective, i.e., the models simultaneously predict words as well as ground truth parse trees in a form called "syntactic distances", where information between these two separate objectives shares the same intermediate representation. Experimental results on the Penn Treebank and Chinese Treebank datasets show that when ground truth parse trees are provided as additional training signals, the model is able to achieve lower perplexity and induce trees with better quality.

A Large-Scale, Open-Domain, Mixed-Interface Dialogue-Based ITS for STEM

We present Korbit, a large-scale, open-domain, mixed-interface, dialogue-based intelligent tutoring system (ITS). Korbit uses machine learning, natural language processing and reinforcement learning to provide interactive, personalized learning online. Korbit has been designed to easily scale to thousands of subjects, by automating, standardizing and simplifying the content creation process. Unlike other ITS, a teacher can develop new learning modules for Korbit in a matter of hours. To facilitate learning across a widerange of STEM subjects, Korbit uses a mixed-interface, which includes videos, interactive dialogue-based exercises, question-answering, conceptual diagrams, mathematical exercises and gamification elements. Korbit has been built to scale to millions of students, by utilizing a state-of-the-art cloud-based micro-service architecture. Korbit launched its first course in 2019 on machine learning, and since then over 7,000 students have enrolled. Although Korbit was designed to be open-domain and highly scalable, A/B testing experiments with real-world students demonstrate that both student learning outcomes and student motivation are substantially improved compared to typical online courses.

Equilibrium Propagation with Continual Weight Updates

Equilibrium Propagation (EP) is a learning algorithm that bridges Machine Learning and Neuroscience, by computing gradients closely matching those of Backpropagation Through Time (BPTT), but with a learning rule local in space. Given an input $x$ and associated target $y$, EP proceeds in two phases: in the first phase neurons evolve freely towards a first steady state; in the second phase output neurons are nudged towards $y$ until they reach a second steady state. However, in existing implementations of EP, the learning rule is not local in time: the weight update is performed after the dynamics of the second phase have converged and requires information of the first phase that is no longer available physically. In this work, we propose a version of EP named Continual Equilibrium Propagation (C-EP) where neuron and synapse dynamics occur simultaneously throughout the second phase, so that the weight update becomes local in time. Such a learning rule local both in space and time opens the possibility of an extremely energy efficient hardware implementation of EP. We prove theoretically that, provided the learning rates are sufficiently small, at each time step of the second phase the dynamics of neurons and synapses follow the gradients of the loss given by BPTT (Theorem 1). We demonstrate training with C-EP on MNIST and generalize C-EP to neural networks where neurons are connected by asymmetric connections. We show through experiments that the more the network updates follows the gradients of BPTT, the best it performs in terms of training. These results bring EP a step closer to biology by better complying with hardware constraints while maintaining its intimate link with backpropagation.

Continual Weight Updates and Convolutional Architectures for Equilibrium Propagation

Equilibrium Propagation (EP) is a biologically inspired alternative algorithm to backpropagation (BP) for training neural networks. It applies to RNNs fed by a static input x that settle to a steady state, such as Hopfield networks. EP is similar to BP in that in the second phase of training, an error signal propagates backwards in the layers of the network, but contrary to BP, the learning rule of EP is spatially local. Nonetheless, EP suffers from two major limitations. On the one hand, due to its formulation in terms of real-time dynamics, EP entails long simulation times, which limits its applicability to practical tasks. On the other hand, the biological plausibility of EP is limited by the fact that its learning rule is not local in time: the synapse update is performed after the dynamics of the second phase have converged and requires information of the first phase that is no longer available physically. Our work addresses these two issues and aims at widening the spectrum of EP from standard machine learning models to more bio-realistic neural networks. First, we propose a discrete-time formulation of EP which enables to simplify equations, speed up training and extend EP to CNNs. Our CNN model achieves the best performance ever reported on MNIST with EP. Using the same discrete-time formulation, we introduce Continual Equilibrium Propagation (C-EP): the weights of the network are adjusted continually in the second phase of training using local information in space and time. We show that in the limit of slow changes of synaptic strengths and small nudging, C-EP is equivalent to BPTT (Theorem 1). We numerically demonstrate Theorem 1 and C-EP training on MNIST and generalize it to the bio-realistic situation of a neural network with asymmetric connections between neurons.

DiVA: Diverse Visual Feature Aggregation for Deep Metric Learning

Visual Similarity plays an important role in many computer vision applications. Deep metric learning (DML) is a powerful framework for learning such similarities which not only generalize from training data to identically distributed test distributions, but in particular also translate to unknown test classes. However, its prevailing learning paradigm is class-discriminative supervised training, which typically results in representations specialized in separating training classes. For effective generalization, however, such an image representation needs to capture a diverse range of data characteristics. To this end, we propose and study multiple complementary learning tasks, targeting conceptually different data relationships by only resorting to the available training samples and labels of a standard DML setting. Through simultaneous optimization of our tasks we learn a single model to aggregate their training signals, resulting in strong generalization and state-of-the-art performance on multiple established DML benchmark datasets.

Learning To Navigate The Synthetically Accessible Chemical Space Using Reinforcement Learning

Over the last decade, there has been significant progress in the field of machine learning for de novo drug design, particularly in deep generative models. However, current generative approaches exhibit a significant challenge as they do not ensure that the proposed molecular structures can be feasibly synthesized nor do they provide the synthesis routes of the proposed small molecules, thereby seriously limiting their practical applicability. In this work, we propose a novel forward synthesis framework powered by reinforcement learning (RL) for de novo drug design, Policy Gradient for Forward Synthesis (PGFS), that addresses this challenge by embedding the concept of synthetic accessibility directly into the de novo drug design system. In this setup, the agent learns to navigate through the immense synthetically accessible chemical space by subjecting commercially available small molecule building blocks to valid chemical reactions at every time step of the iterative virtual multi-step synthesis process. The proposed environment for drug discovery provides a highly challenging test-bed for RL algorithms owing to the large state space and high-dimensional continuous action space with hierarchical actions. PGFS achieves state-of-the-art performance in generating structures with high QED and logP. Moreover, we validate PGFS in an in-silico proof-of-concept associated with three HIV targets, and the candidates generated with PGFS outperformed the existing benchmarks in optimizing the activity of the biological targets. Finally, we describe how the end-to-end training conceptualized in this study represents an important paradigm in radically expanding the synthesizable chemical space and automating the drug discovery process.

The Variational Bandwidth Bottleneck: Stochastic Evaluation on an Information Budget

In many applications, it is desirable to extract only the relevant information from complex input data, which involves making a decision about which input features are relevant. The information bottleneck method formalizes this as an information-theoretic optimization problem by maintaining an optimal tradeoff between compression (throwing away irrelevant input information), and predicting the target. In many problem settings, including the reinforcement learning problems we consider in this work, we might prefer to compress only part of the input. This is typically the case when we have a standard conditioning input, such as a state observation, and a "privileged" input, which might correspond to the goal of a task, the output of a costly planning algorithm, or communication with another agent. In such cases, we might prefer to compress the privileged input, either to achieve better generalization (e.g., with respect to goals) or to minimize access to costly information (e.g., in the case of communication). Practical implementations of the information bottleneck based on variational inference require access to the privileged input in order to compute the bottleneck variable, so although they perform compression, this compression operation itself needs unrestricted, lossless access. In this work, we propose the variational bandwidth bottleneck, which decides for each example on the estimated value of the privileged information before seeing it, i.e., only based on the standard input, and then accordingly chooses stochastically, whether to access the privileged input or not. We formulate a tractable approximation to this framework and demonstrate in a series of reinforcement learning experiments that it can improve generalization and reduce access to computationally costly information.

Experience Grounds Language

Successful linguistic communication relies on a shared experience of the world, and it is this shared experience that makes utterances meaningful. Despite the incredible effectiveness of language processing models trained on text alone, today's best systems still make mistakes that arise from a failure to relate language to the physical world it describes and to the social interactions it facilitates. Natural Language Processing is a diverse field, and progress throughout its development has come from new representational theories, modeling techniques, data collection paradigms, and tasks. We posit that the present success of representation learning approaches trained on large text corpora can be deeply enriched from the parallel tradition of research on the contextual and social nature of language. In this article, we consider work on the contextual foundations of language: grounding, embodiment, and social interaction. We describe a brief history and possible progression of how contextual information can factor into our representations, with an eye towards how this integration can move the field forward and where it is currently being pioneered. We believe this framing will serve as a roadmap for truly contextual language understanding.