Needle in the Haystack for Memory Based Large Language Models

In this paper, we demonstrate the benefits of using memory augmented Large Language Model (LLM) architecture in improving the recall abilities of facts from a potentially long context. As a case study we test LARIMAR, a recently proposed LLM architecture which augments a LLM decoder with an external associative memory, on several long-context recall tasks, including passkey and needle-in-the-haystack tests. We demonstrate that the external memory can be adapted at test time to handle contexts much longer than those seen during training, while keeping readouts from the memory recognizable to the trained decoder and without increasing GPU memory footprint. Compared to alternative architectures for long-context recall tasks with models of a comparable parameter count, LARIMAR is able to maintain strong performance without any task-specific training.

A Deep Dive into the Trade-Offs of Parameter-Efficient Preference Alignment Techniques

Large language models are first pre-trained on trillions of tokens and then instruction-tuned or aligned to specific preferences. While pre-training remains out of reach for most researchers due to the compute required, fine-tuning has become affordable thanks to parameter-efficient methods such as LoRA and QLoRA. Alignment is known to be sensitive to the many factors involved, including the quantity and quality of data, the alignment method, and the adapter rank. However, there has not yet been an extensive study of their effect on downstream performance. To address this gap, we conduct an in-depth investigation of the impact of popular choices for three crucial axes: (i) the alignment dataset (HH-RLHF and BeaverTails), (ii) the alignment technique (SFT and DPO), and (iii) the model (LLaMA-1, Vicuna-v1.3, Mistral-7b, and Mistral-7b-Instruct). Our extensive setup spanning over 300 experiments reveals consistent trends and unexpected findings. We observe how more informative data helps with preference alignment, cases where supervised fine-tuning outperforms preference optimization, and how aligning to a distinct preference boosts performance on downstream tasks. Through our in-depth analyses, we put forward key guidelines to help researchers perform more effective parameter-efficient LLM alignment.

Larimar: Large Language Models with Episodic Memory Control

Efficient and accurate updating of knowledge stored in Large Language Models (LLMs) is one of the most pressing research challenges today. This paper presents Larimar - a novel, brain-inspired architecture for enhancing LLMs with a distributed episodic memory. Larimar's memory allows for dynamic, one-shot updates of knowledge without the need for computationally expensive re-training or fine-tuning. Experimental results on multiple fact editing benchmarks demonstrate that Larimar attains accuracy comparable to most competitive baselines, even in the challenging sequential editing setup, but also excels in speed - yielding speed-ups of 4-10x depending on the base LLM - as well as flexibility due to the proposed architecture being simple, LLM-agnostic, and hence general. We further provide mechanisms for selective fact forgetting and input context length generalization with Larimar and show their effectiveness.

Boundary Exploration for Bayesian Optimization With Unknown Physical Constraints

Bayesian optimization has been successfully applied to optimize black-box functions where the number of evaluations is severely limited. However, in many real-world applications, it is hard or impossible to know in advance which designs are feasible due to some physical or system limitations. These issues lead to an even more challenging problem of optimizing an unknown function with unknown constraints. In this paper, we observe that in such scenarios optimal solution typically lies on the boundary between feasible and infeasible regions of the design space, making it considerably more difficult than that with interior optima. Inspired by this observation, we propose BE-CBO, a new Bayesian optimization method that efficiently explores the boundary between feasible and infeasible designs. To identify the boundary, we learn the constraints with an ensemble of neural networks that outperform the standard Gaussian Processes for capturing complex boundaries. Our method demonstrates superior performance against state-of-the-art methods through comprehensive experiments on synthetic and real-world benchmarks.

ProtIR: Iterative Refinement between Retrievers and Predictors for Protein Function Annotation

Protein function annotation is an important yet challenging task in biology. Recent deep learning advancements show significant potential for accurate function prediction by learning from protein sequences and structures. Nevertheless, these predictor-based methods often overlook the modeling of protein similarity, an idea commonly employed in traditional approaches using sequence or structure retrieval tools. To fill this gap, we first study the effect of inter-protein similarity modeling by benchmarking retriever-based methods against predictors on protein function annotation tasks. Our results show that retrievers can match or outperform predictors without large-scale pre-training. Building on these insights, we introduce a novel variational pseudo-likelihood framework, ProtIR, designed to improve function predictors by incorporating inter-protein similarity modeling. This framework iteratively refines knowledge between a function predictor and retriever, thereby combining the strengths of both predictors and retrievers. ProtIR showcases around 10% improvement over vanilla predictor-based methods. Besides, it achieves performance on par with protein language model-based methods, yet without the need for massive pre-training, highlighting the efficacy of our framework. Code will be released upon acceptance.

Structure-Informed Protein Language Model

Protein language models are a powerful tool for learning protein representations through pre-training on vast protein sequence datasets. However, traditional protein language models lack explicit structural supervision, despite its relevance to protein function. To address this issue, we introduce the integration of remote homology detection to distill structural information into protein language models without requiring explicit protein structures as input. We evaluate the impact of this structure-informed training on downstream protein function prediction tasks. Experimental results reveal consistent improvements in function annotation accuracy for EC number and GO term prediction. Performance on mutant datasets, however, varies based on the relationship between targeted properties and protein structures. This underscores the importance of considering this relationship when applying structure-aware training to protein function prediction tasks. Code and model weights are available at https://github.com/DeepGraphLearning/esm-s.

Hierarchical Grammar-Induced Geometry for Data-Efficient Molecular Property Prediction

The prediction of molecular properties is a crucial task in the field of material and drug discovery. The potential benefits of using deep learning techniques are reflected in the wealth of recent literature. Still, these techniques are faced with a common challenge in practice: Labeled data are limited by the cost of manual extraction from literature and laborious experimentation. In this work, we propose a data-efficient property predictor by utilizing a learnable hierarchical molecular grammar that can generate molecules from grammar production rules. Such a grammar induces an explicit geometry of the space of molecular graphs, which provides an informative prior on molecular structural similarity. The property prediction is performed using graph neural diffusion over the grammar-induced geometry. On both small and large datasets, our evaluation shows that this approach outperforms a wide spectrum of baselines, including supervised and pre-trained graph neural networks. We include a detailed ablation study and further analysis of our solution, showing its effectiveness in cases with extremely limited data. Code is available at https://github.com/gmh14/Geo-DEG.

The Impact of Positional Encoding on Length Generalization in Transformers

Length generalization, the ability to generalize from small training context sizes to larger ones, is a critical challenge in the development of Transformer-based language models. Positional encoding (PE) has been identified as a major factor influencing length generalization, but the exact impact of different PE schemes on extrapolation in downstream tasks remains unclear. In this paper, we conduct a systematic empirical study comparing the length generalization performance of decoder-only Transformers with five different position encoding approaches including Absolute Position Embedding (APE), T5's Relative PE, ALiBi, and Rotary, in addition to Transformers without positional encoding (NoPE). Our evaluation encompasses a battery of reasoning and mathematical tasks. Our findings reveal that the most commonly used positional encoding methods, such as ALiBi, Rotary, and APE, are not well suited for length generalization in downstream tasks. More importantly, NoPE outperforms other explicit positional encoding methods while requiring no additional computation. We theoretically demonstrate that NoPE can represent both absolute and relative PEs, but when trained with SGD, it mostly resembles T5's relative PE attention patterns. Finally, we find that scratchpad is not always helpful to solve length generalization and its format highly impacts the model's performance. Overall, our work suggests that explicit position embeddings are not essential for decoder-only Transformers to generalize well to longer sequences.

Keeping Up with the Language Models: Robustness-Bias Interplay in NLI Data and Models

Auditing unwanted social bias in language models (LMs) is inherently hard due to the multidisciplinary nature of the work. In addition, the rapid evolution of LMs can make benchmarks irrelevant in no time. Bias auditing is further complicated by LM brittleness: when a presumably biased outcome is observed, is it due to model bias or model brittleness? We propose enlisting the models themselves to help construct bias auditing datasets that remain challenging, and introduce bias measures that distinguish between types of model errors. First, we extend an existing bias benchmark for NLI (BBNLI) using a combination of LM-generated lexical variations, adversarial filtering, and human validation. We demonstrate that the newly created dataset (BBNLInext) is more challenging than BBNLI: on average, BBNLI-next reduces the accuracy of state-of-the-art NLI models from 95.3%, as observed by BBNLI, to 58.6%. Second, we employ BBNLI-next to showcase the interplay between robustness and bias, and the subtlety in differentiating between the two. Third, we point out shortcomings in current bias scores used in the literature and propose bias measures that take into account pro-/anti-stereotype bias and model brittleness. We will publicly release the BBNLI-next dataset to inspire research on rapidly expanding benchmarks to keep up with model evolution, along with research on the robustness-bias interplay in bias auditing. Note: This paper contains offensive text examples.

Equivariant Few-Shot Learning from Pretrained Models

Efficient transfer learning algorithms are key to the success of foundation models on diverse downstream tasks even with limited data. Recent works of \cite{basu2022equi} and \cite{kaba2022equivariance} propose group averaging (\textit{equitune}) and optimization-based methods, respectively, over features from group-transformed inputs to obtain equivariant outputs from non-equivariant neural networks. While \cite{kaba2022equivariance} are only concerned with training from scratch, we find that equitune performs poorly on equivariant zero-shot tasks despite good finetuning results. We hypothesize that this is because pretrained models provide better quality features for certain transformations than others and simply averaging them is deleterious. Hence, we propose $\lambda$-\textit{equitune} that averages the features using \textit{importance weights}, $\lambda$s. These weights are learned directly from the data using a small neural network, leading to excellent zero-shot and finetuned results that outperform equitune. Further, we prove that $\lambda$-equitune is equivariant and a universal approximator of equivariant functions. Additionally, we show that the method of \cite{kaba2022equivariance} used with appropriate loss functions, which we call \textit{equizero}, also gives excellent zero-shot and finetuned performance. Both equitune and equizero are special cases of $\lambda$-equitune. To show the simplicity and generality of our method, we validate on a wide range of diverse applications and models such as 1) image classification using CLIP, 2) deep Q-learning, 3) fairness in natural language generation (NLG), 4) compositional generalization in languages, and 5) image classification using pretrained CNNs such as Resnet and Alexnet.