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The Impact of Domain Shift on Left and Right Ventricle Segmentation in Short Axis Cardiac MR Images


Sep 22, 2021
Devran Ugurlu, Esther Puyol-Anton, Bram Ruijsink, Alistair Young, Ines Machado, Kerstin Hammernik, Andrew P. King, Julia A. Schnabel

* Accepted to STACOM 2021 

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Quality-aware Cine Cardiac MRI Reconstruction and Analysis from Undersampled k-space Data


Sep 16, 2021
Ines Machado, Esther Puyol-Anton, Kerstin Hammernik, Gastao Cruz, Devran Ugurlu, Bram Ruijsink, Miguel Castelo-Branco, Alistair Young, Claudia Prieto, Julia A. Schnabel, Andrew P. King


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The Pitfalls of Sample Selection: A Case Study on Lung Nodule Classification


Aug 11, 2021
Vasileios Baltatzis, Kyriaki-Margarita Bintsi, Loic Le Folgoc, Octavio E. Martinez Manzanera, Sam Ellis, Arjun Nair, Sujal Desai, Ben Glocker, Julia A. Schnabel

* Accepted at PRIME, MICCAI 2021 

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The Effect of the Loss on Generalization: Empirical Study on Synthetic Lung Nodule Data


Aug 10, 2021
Vasileios Baltatzis, Loic Le Folgoc, Sam Ellis, Octavio E. Martinez Manzanera, Kyriaki-Margarita Bintsi, Arjun Nair, Sujal Desai, Ben Glocker, Julia A. Schnabel

* Accepted at iMIMIC, MICCAI 2021 

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AtrialGeneral: Domain Generalization for Left Atrial Segmentation of Multi-Center LGE MRIs


Jul 05, 2021
Lei Li, Veronika A. Zimmer, Julia A. Schnabel, Xiahai Zhuang

* 10 pages, 4 figures, MICCAI2021 

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Medical Image Analysis on Left Atrial LGE MRI for Atrial Fibrillation Studies: A Review


Jun 25, 2021
Lei Li, Veronika A. Zimmer, Julia A. Schnabel, Xiahai Zhuang

* 23 pages 

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Random Style Transfer based Domain Generalization Networks Integrating Shape and Spatial Information


Sep 03, 2020
Lei Li, Veronika A. Zimmer, Wangbin Ding, Fuping Wu, Liqin Huang, Julia A. Schnabel, Xiahai Zhuang

* 11 pages 

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AtrialJSQnet: A New Framework for Joint Segmentation and Quantification of Left Atrium and Scars Incorporating Spatial and Shape Information


Aug 11, 2020
Lei Li, Veronika A. Zimmer, Julia A. Schnabel, Xiahai Zhuang

* 12 pages 

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Screen Tracking for Clinical Translation of Live Ultrasound Image Analysis Methods


Jul 13, 2020
Simona Treivase, Alberto Gomez, Jacqueline Matthew, Emily Skelton, Julia A. Schnabel, Nicolas Toussaint


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Joint Left Atrial Segmentation and Scar Quantification Based on a DNN with Spatial Encoding and Shape Attention


Jun 23, 2020
Lei Li, Xin Weng, Julia A. Schnabel, Xiahai Zhuang

* MICCAI 2020 
* 10 pages 

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Deep Learning Based Detection and Correction of Cardiac MR Motion Artefacts During Reconstruction for High-Quality Segmentation


Oct 21, 2019
Ilkay Oksuz, James R. Clough, Bram Ruijsink, Esther Puyol Anton, Aurelien Bustin, Gastao Cruz, Claudia Prieto, Andrew P. King, Julia A. Schnabel


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A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology


Oct 04, 2019
James R. Clough, Ilkay Oksuz, Nicholas Byrne, Veronika A. Zimmer, Julia A. Schnabel, Andrew P. King

* 12 pages, 12 figures 

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Model-Based and Data-Driven Strategies in Medical Image Computing


Sep 30, 2019
Daniel Rueckert, Julia A. Schnabel

* Accepted in IEEE Proceedings 

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dAUTOMAP: decomposing AUTOMAP to achieve scalability and enhance performance


Sep 25, 2019
Jo Schlemper, Ilkay Oksuz, James R. Clough, Jinming Duan, Andrew P. King, Julia A. Schnabel, Joseph V. Hajnal, Daniel Rueckert

* Presented at ISMRM 27th Annual Meeting & Exhibition (Abstract #658) 

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Global and Local Interpretability for Cardiac MRI Classification


Jun 14, 2019
James R. Clough, Ilkay Oksuz, Esther Puyol-Anton, Bram Ruijsink, Andrew P. King, Julia A. Schnabel

* Accepted at MICCAI 2019, 8 pages, 3 figures 

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Detection and Correction of Cardiac MR Motion Artefacts during Reconstruction from K-space


Jun 12, 2019
lkay Oksuz, James Clough, Bram Ruijsink, Esther Puyol-Anton, Aurelien Bustin, Gastao Cruz, Claudia Prieto, Daniel Rueckert, Andrew P. King, Julia A. Schnabel

* Accepted to MICCAI 2019. arXiv admin note: text overlap with arXiv:1808.05130 

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Mechanically Powered Motion Imaging Phantoms: Proof of Concept


May 17, 2019
Alberto Gomez, Cornelia Schmitz, Markus Henningsson, James Housden, Yohan Noh, Veronika A. Zimmer, James R. Clough, Ilkay Oksuz, Nicolas Toussaint, Andrew P. King, Julia A. Schnabel

* Accepted for publication at IEEE EMBC (41st International Engineering in Medicine and Biology Conference) 2019 

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FastReg: Fast Non-Rigid Registration via Accelerated Optimisation on the Manifold of Diffeomorphisms


Mar 05, 2019
Daniel Grzech, Loïc le Folgoc, Mattias P. Heinrich, Bishesh Khanal, Jakub Moll, Julia A. Schnabel, Ben Glocker, Bernhard Kainz

* Accepted for the 26th Conference on Information Processing in Medical Imaging (IPMI 2019) 

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Explicit topological priors for deep-learning based image segmentation using persistent homology


Jan 29, 2019
James R. Clough, Ilkay Oksuz, Nicholas Byrne, Julia A. Schnabel, Andrew P. King

* 12 pages 

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Magnetic Resonance Fingerprinting using Recurrent Neural Networks


Dec 19, 2018
Ilkay Oksuz, Gastao Cruz, James Clough, Aurelien Bustin, Nicolo Fuin, Rene M. Botnar, Claudia Prieto, Andrew P. King, Julia A. Schnabel

* Accepted for ISBI 2018 

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Automatic CNN-based detection of cardiac MR motion artefacts using k-space data augmentation and curriculum learning


Oct 29, 2018
lkay Oksuz, Bram Ruijsink, Esther Puyol-Anton, James Clough, Gastao Cruz, Aurelien Bustin, Claudia Prieto, Rene Botnar, Daniel Rueckert, Julia A. Schnabel, Andrew P. King

* Submitted to Medical Image Analysis 

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Deep Learning using K-space Based Data Augmentation for Automated Cardiac MR Motion Artefact Detection


Aug 31, 2018
Ilkay Oksuz, Bram Ruijsink, Esther Puyol-Anton, Aurelien Bustin, Gastao Cruz, Claudia Prieto, Daniel Rueckert, Julia A. Schnabel, Andrew P. King

* Accepted for MICCAI2018 Conference 

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Weakly Supervised Localisation for Fetal Ultrasound Images


Aug 02, 2018
Nicolas Toussaint, Bishesh Khanal, Matthew Sinclair, Alberto Gomez, Emily Skelton, Jacqueline Matthew, Julia A. Schnabel

* 4th Workshop on Deep Learning for Medical Image Analysis, MICCAI 2018, Granada, Spain 

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Learning associations between clinical information and motion-based descriptors using a large scale MR-derived cardiac motion atlas


Jul 27, 2018
Esther Puyol-Anton, Bram Ruijsink, Helene Langet, Mathieu De Craene, Paolo Piro, Julia A. Schnabel, Andrew P. King

* 2018 International Workshop on Statistical Atlases and Computational Modeling of the Heart 

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EchoFusion: Tracking and Reconstruction of Objects in 4D Freehand Ultrasound Imaging without External Trackers


Jul 19, 2018
Bishesh Khanal, Alberto Gomez, Nicolas Toussaint, Steven McDonagh, Veronika Zimmer, Emily Skelton, Jacqueline Matthew, Daniel Grzech, Robert Wright, Chandni Gupta, Benjamin Hou, Daniel Rueckert, Julia A. Schnabel, Bernhard Kainz

* MICCAI Workshop on Perinatal, Preterm and Paediatric Image analysis (PIPPI), 2018 

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