The Case for Learned Spatial Indexes

Spatial data is ubiquitous. Massive amounts of data are generated every day from billions of GPS-enabled devices such as cell phones, cars, sensors, and various consumer-based applications such as Uber, Tinder, location-tagged posts in Facebook, Twitter, Instagram, etc. This exponential growth in spatial data has led the research community to focus on building systems and applications that can process spatial data efficiently. In the meantime, recent research has introduced learned index structures. In this work, we use techniques proposed from a state-of-the art learned multi-dimensional index structure (namely, Flood) and apply them to five classical multi-dimensional indexes to be able to answer spatial range queries. By tuning each partitioning technique for optimal performance, we show that (i) machine learned search within a partition is faster by 11.79\% to 39.51\% than binary search when using filtering on one dimension, (ii) the bottleneck for tree structures is index lookup, which could potentially be improved by linearizing the indexed partitions (iii) filtering on one dimension and refining using machine learned indexes is 1.23x to 1.83x times faster than closest competitor which filters on two dimensions, and (iv) learned indexes can have a significant impact on the performance of low selectivity queries while being less effective under higher selectivities.

Tsunami: A Learned Multi-dimensional Index for Correlated Data and Skewed Workloads

Filtering data based on predicates is one of the most fundamental operations for any modern data warehouse. Techniques to accelerate the execution of filter expressions include clustered indexes, specialized sort orders (e.g., Z-order), multi-dimensional indexes, and, for high selectivity queries, secondary indexes. However, these schemes are hard to tune and their performance is inconsistent. Recent work on learned multi-dimensional indexes has introduced the idea of automatically optimizing an index for a particular dataset and workload. However, the performance of that work suffers in the presence of correlated data and skewed query workloads, both of which are common in real applications. In this paper, we introduce Tsunami, which addresses these limitations to achieve up to 6X faster query performance and up to 8X smaller index size than existing learned multi-dimensional indexes, in addition to up to 11X faster query performance and 170X smaller index size than optimally-tuned traditional indexes.

Learning Multi-dimensional Indexes

Scanning and filtering over multi-dimensional tables are key operations in modern analytical database engines. To optimize the performance of these operations, databases often create clustered indexes over a single dimension or multi-dimensional indexes such as R-trees, or use complex sort orders (e.g., Z-ordering). However, these schemes are often hard to tune and their performance is inconsistent across different datasets and queries. In this paper, we introduce Flood, a multi-dimensional in-memory index that automatically adapts itself to a particular dataset and workload by jointly optimizing the index structure and data storage. Flood achieves up to three orders of magnitude faster performance for range scans with predicates than state-of-the-art multi-dimensional indexes or sort orders on real-world datasets and workloads. Our work serves as a building block towards an end-to-end learned database system.

LISA: Towards Learned DNA Sequence Search

Next-generation sequencing (NGS) technologies have enabled affordable sequencing of billions of short DNA fragments at high throughput, paving the way for population-scale genomics. Genomics data analytics at this scale requires overcoming performance bottlenecks, such as searching for short DNA sequences over long reference sequences. In this paper, we introduce LISA (Learned Indexes for Sequence Analysis), a novel learning-based approach to DNA sequence search. As a first proof of concept, we focus on accelerating one of the most essential flavors of the problem, called exact search. LISA builds on and extends FM-index, which is the state-of-the-art technique widely deployed in genomics tool-chains. Initial experiments with human genome datasets indicate that LISA achieves up to a factor of 4X performance speedup against its traditional counterpart.

ALEX: An Updatable Adaptive Learned Index

Recent work on "learned indexes" has revolutionized the way we look at the decades-old field of DBMS indexing. The key idea is that indexes are "models" that predict the position of a key in a dataset. Indexes can, thus, be learned. The original work by Kraska et al. shows surprising results in terms of search performance and space requirements: A learned index beats a B+Tree by a factor of up to three in search time and by an order of magnitude in memory footprint, however it is limited to static, read-only workloads. This paper presents a new class of learned indexes called ALEX which addresses issues that arise when implementing dynamic, updatable learned indexes. Compared to the learned index from Kraska et al., ALEX has up to 3000X lower space requirements, but has up to 2.7X higher search performance on static workloads. Compared to a B+Tree, ALEX achieves up to 3.5X and 3.3X higher performance on static and some dynamic workloads, respectively, with up to 5 orders of magnitude smaller index size. Our detailed experiments show that ALEX presents a key step towards making learned indexes practical for a broader class of database workloads with dynamic updates.