DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies

In the upcoming decade, deep learning may revolutionize the natural sciences, enhancing our capacity to model and predict natural occurrences. This could herald a new era of scientific exploration, bringing significant advancements across sectors from drug development to renewable energy. To answer this call, we present DeepSpeed4Science initiative (deepspeed4science.ai) which aims to build unique capabilities through AI system technology innovations to help domain experts to unlock today's biggest science mysteries. By leveraging DeepSpeed's current technology pillars (training, inference and compression) as base technology enablers, DeepSpeed4Science will create a new set of AI system technologies tailored for accelerating scientific discoveries by addressing their unique complexity beyond the common technical approaches used for accelerating generic large language models (LLMs). In this paper, we showcase the early progress we made with DeepSpeed4Science in addressing two of the critical system challenges in structural biology research.

Generative Residual Diffusion Modeling for Km-scale Atmospheric Downscaling

The state of the art for physical hazard prediction from weather and climate requires expensive km-scale numerical simulations driven by coarser resolution global inputs. Here, a km-scale downscaling diffusion model is presented as a cost effective alternative. The model is trained from a regional high-resolution weather model over Taiwan, and conditioned on ERA5 reanalysis data. To address the downscaling uncertainties, large resolution ratios (25km to 2km), different physics involved at different scales and predict channels that are not in the input data, we employ a two-step approach (\textit{ResDiff}) where a (UNet) regression predicts the mean in the first step and a diffusion model predicts the residual in the second step. \textit{ResDiff} exhibits encouraging skill in bulk RMSE and CRPS scores. The predicted spectra and distributions from ResDiff faithfully recover important power law relationships regulating damaging wind and rain extremes. Case studies of coherent weather phenomena reveal appropriate multivariate relationships reminiscent of learnt physics. This includes the sharp wind and temperature variations that co-locate with intense rainfall in a cold front, and the extreme winds and rainfall bands that surround the eyewall of typhoons. Some evidence of simultaneous bias correction is found. A first attempt at downscaling directly from an operational global forecast model successfully retains many of these benefits. The implication is that a new era of fully end-to-end, global-to-regional machine learning weather prediction is likely near at hand.

Fast Training of Diffusion Models with Masked Transformers

We propose an efficient approach to train large diffusion models with masked transformers. While masked transformers have been extensively explored for representation learning, their application to generative learning is less explored in the vision domain. Our work is the first to exploit masked training to reduce the training cost of diffusion models significantly. Specifically, we randomly mask out a high proportion (\emph{e.g.}, 50\%) of patches in diffused input images during training. For masked training, we introduce an asymmetric encoder-decoder architecture consisting of a transformer encoder that operates only on unmasked patches and a lightweight transformer decoder on full patches. To promote a long-range understanding of full patches, we add an auxiliary task of reconstructing masked patches to the denoising score matching objective that learns the score of unmasked patches. Experiments on ImageNet-256$\times$256 show that our approach achieves the same performance as the state-of-the-art Diffusion Transformer (DiT) model, using only 31\% of its original training time. Thus, our method allows for efficient training of diffusion models without sacrificing the generative performance.

A Variational Perspective on Solving Inverse Problems with Diffusion Models

Diffusion models have emerged as a key pillar of foundation models in visual domains. One of their critical applications is to universally solve different downstream inverse tasks via a single diffusion prior without re-training for each task. Most inverse tasks can be formulated as inferring a posterior distribution over data (e.g., a full image) given a measurement (e.g., a masked image). This is however challenging in diffusion models since the nonlinear and iterative nature of the diffusion process renders the posterior intractable. To cope with this challenge, we propose a variational approach that by design seeks to approximate the true posterior distribution. We show that our approach naturally leads to regularization by denoising diffusion process (RED-Diff) where denoisers at different timesteps concurrently impose different structural constraints over the image. To gauge the contribution of denoisers from different timesteps, we propose a weighting mechanism based on signal-to-noise-ratio (SNR). Our approach provides a new variational perspective for solving inverse problems with diffusion models, allowing us to formulate sampling as stochastic optimization, where one can simply apply off-the-shelf solvers with lightweight iterates. Our experiments for image restoration tasks such as inpainting and superresolution demonstrate the strengths of our method compared with state-of-the-art sampling-based diffusion models.

Recurrence without Recurrence: Stable Video Landmark Detection with Deep Equilibrium Models

Cascaded computation, whereby predictions are recurrently refined over several stages, has been a persistent theme throughout the development of landmark detection models. In this work, we show that the recently proposed Deep Equilibrium Model (DEQ) can be naturally adapted to this form of computation. Our Landmark DEQ (LDEQ) achieves state-of-the-art performance on the challenging WFLW facial landmark dataset, reaching $3.92$ NME with fewer parameters and a training memory cost of $\mathcal{O}(1)$ in the number of recurrent modules. Furthermore, we show that DEQs are particularly suited for landmark detection in videos. In this setting, it is typical to train on still images due to the lack of labelled videos. This can lead to a ``flickering'' effect at inference time on video, whereby a model can rapidly oscillate between different plausible solutions across consecutive frames. By rephrasing DEQs as a constrained optimization, we emulate recurrence at inference time, despite not having access to temporal data at training time. This Recurrence without Recurrence (RwR) paradigm helps in reducing landmark flicker, which we demonstrate by introducing a new metric, normalized mean flicker (NMF), and contributing a new facial landmark video dataset (WFLW-V) targeting landmark uncertainty. On the WFLW-V hard subset made up of $500$ videos, our LDEQ with RwR improves the NME and NMF by $10$ and $13\%$ respectively, compared to the strongest previously published model using a hand-tuned conventional filter.

Open-Vocabulary Panoptic Segmentation with Text-to-Image Diffusion Models

We present ODISE: Open-vocabulary DIffusion-based panoptic SEgmentation, which unifies pre-trained text-image diffusion and discriminative models to perform open-vocabulary panoptic segmentation. Text-to-image diffusion models have shown the remarkable capability of generating high-quality images with diverse open-vocabulary language descriptions. This demonstrates that their internal representation space is highly correlated with open concepts in the real world. Text-image discriminative models like CLIP, on the other hand, are good at classifying images into open-vocabulary labels. We propose to leverage the frozen representation of both these models to perform panoptic segmentation of any category in the wild. Our approach outperforms the previous state of the art by significant margins on both open-vocabulary panoptic and semantic segmentation tasks. In particular, with COCO training only, our method achieves 23.4 PQ and 30.0 mIoU on the ADE20K dataset, with 8.3 PQ and 7.9 mIoU absolute improvement over the previous state-of-the-art. Project page is available at https://jerryxu.net/ODISE .

Score-based Diffusion Models in Function Space

Diffusion models have recently emerged as a powerful framework for generative modeling. They consist of a forward process that perturbs input data with Gaussian white noise and a reverse process that learns a score function to generate samples by denoising. Despite their tremendous success, they are mostly formulated on finite-dimensional spaces, e.g. Euclidean, limiting their applications to many domains where the data has a functional form such as in scientific computing and 3D geometric data analysis. In this work, we introduce a mathematically rigorous framework called Denoising Diffusion Operators (DDOs) for training diffusion models in function space. In DDOs, the forward process perturbs input functions gradually using a Gaussian process. The generative process is formulated by integrating a function-valued Langevin dynamic. Our approach requires an appropriate notion of the score for the perturbed data distribution, which we obtain by generalizing denoising score matching to function spaces that can be infinite-dimensional. We show that the corresponding discretized algorithm generates accurate samples at a fixed cost that is independent of the data resolution. We theoretically and numerically verify the applicability of our approach on a set of problems, including generating solutions to the Navier-Stokes equation viewed as the push-forward distribution of forcings from a Gaussian Random Field (GRF).

I$^2$SB: Image-to-Image Schrödinger Bridge

We propose Image-to-Image Schr\"odinger Bridge (I$^2$SB), a new class of conditional diffusion models that directly learn the nonlinear diffusion processes between two given distributions. These diffusion bridges are particularly useful for image restoration, as the degraded images are structurally informative priors for reconstructing the clean images. I$^2$SB belongs to a tractable class of Schr\"odinger bridge, the nonlinear extension to score-based models, whose marginal distributions can be computed analytically given boundary pairs. This results in a simulation-free framework for nonlinear diffusions, where the I$^2$SB training becomes scalable by adopting practical techniques used in standard diffusion models. We validate I$^2$SB in solving various image restoration tasks, including inpainting, super-resolution, deblurring, and JPEG restoration on ImageNet 256x256 and show that I$^2$SB surpasses standard conditional diffusion models with more interpretable generative processes. Moreover, I$^2$SB matches the performance of inverse methods that additionally require the knowledge of the corruption operators. Our work opens up new algorithmic opportunities for developing efficient nonlinear diffusion models on a large scale. scale. Project page: https://i2sb.github.io/

PhysDiff: Physics-Guided Human Motion Diffusion Model

Denoising diffusion models hold great promise for generating diverse and realistic human motions. However, existing motion diffusion models largely disregard the laws of physics in the diffusion process and often generate physically-implausible motions with pronounced artifacts such as floating, foot sliding, and ground penetration. This seriously impacts the quality of generated motions and limits their real-world application. To address this issue, we present a novel physics-guided motion diffusion model (PhysDiff), which incorporates physical constraints into the diffusion process. Specifically, we propose a physics-based motion projection module that uses motion imitation in a physics simulator to project the denoised motion of a diffusion step to a physically-plausible motion. The projected motion is further used in the next diffusion step to guide the denoising diffusion process. Intuitively, the use of physics in our model iteratively pulls the motion toward a physically-plausible space. Experiments on large-scale human motion datasets show that our approach achieves state-of-the-art motion quality and improves physical plausibility drastically (>78% for all datasets).

Fast Sampling of Diffusion Models via Operator Learning

Diffusion models have found widespread adoption in various areas. However, sampling from them is slow because it involves emulating a reverse process with hundreds-to-thousands of network evaluations. Inspired by the success of neural operators in accelerating differential equations solving, we approach this problem by solving the underlying neural differential equation from an operator learning perspective. We examine probability flow ODE trajectories in diffusion models and observe a compact energy spectrum that can be learned efficiently in Fourier space. With this insight, we propose diffusion Fourier neural operator (DFNO) with temporal convolution in Fourier space to parameterize the operator that maps initial condition to the solution trajectory, which is a continuous function in time. DFNO can be applied to any diffusion model and generate high-quality samples in one model forward call. Our method achieves the state-of-the-art FID of 4.72 on CIFAR-10 using only one model evaluation.