Direct Dual-Energy CT Material Decomposition using Model-based Denoising Diffusion Model

Dual-energy X-ray Computed Tomography (DECT) constitutes an advanced technology which enables automatic decomposition of materials in clinical images without manual segmentation using the dependency of the X-ray linear attenuation with energy. However, most methods perform material decomposition in the image domain as a post-processing step after reconstruction but this procedure does not account for the beam-hardening effect and it results in sub-optimal results. In this work, we propose a deep learning procedure called Dual-Energy Decomposition Model-based Diffusion (DEcomp-MoD) for quantitative material decomposition which directly converts the DECT projection data into material images. The algorithm is based on incorporating the knowledge of the spectral DECT model into the deep learning training loss and combining a score-based denoising diffusion learned prior in the material image domain. Importantly the inference optimization loss takes as inputs directly the sinogram and converts to material images through a model-based conditional diffusion model which guarantees consistency of the results. We evaluate the performance with both quantitative and qualitative estimation of the proposed DEcomp-MoD method on synthetic DECT sinograms from the low-dose AAPM dataset. Finally, we show that DEcomp-MoD outperform state-of-the-art unsupervised score-based model and supervised deep learning networks, with the potential to be deployed for clinical diagnosis.

Multimodal 3D Brain Tumor Segmentation with Adversarial Training and Conditional Random Field

Accurate brain tumor segmentation remains a challenging task due to structural complexity and great individual differences of gliomas. Leveraging the pre-eminent detail resilience of CRF and spatial feature extraction capacity of V-net, we propose a multimodal 3D Volume Generative Adversarial Network (3D-vGAN) for precise segmentation. The model utilizes Pseudo-3D for V-net improvement, adds conditional random field after generator and use original image as supplemental guidance. Results, using the BraTS-2018 dataset, show that 3D-vGAN outperforms classical segmentation models, including U-net, Gan, FCN and 3D V-net, reaching specificity over 99.8%.

Phy-Diff: Physics-guided Hourglass Diffusion Model for Diffusion MRI Synthesis

Diffusion MRI (dMRI) is an important neuroimaging technique with high acquisition costs. Deep learning approaches have been used to enhance dMRI and predict diffusion biomarkers through undersampled dMRI. To generate more comprehensive raw dMRI, generative adversarial network based methods are proposed to include b-values and b-vectors as conditions, but they are limited by unstable training and less desirable diversity. The emerging diffusion model (DM) promises to improve generative performance. However, it remains challenging to include essential information in conditioning DM for more relevant generation, i.e., the physical principles of dMRI and white matter tract structures. In this study, we propose a physics-guided diffusion model to generate high-quality dMRI. Our model introduces the physical principles of dMRI in the noise evolution in the diffusion process and introduce a query-based conditional mapping within the difussion model. In addition, to enhance the anatomical fine detials of the generation, we introduce the XTRACT atlas as prior of white matter tracts by adopting an adapter technique. Our experiment results show that our method outperforms other state-of-the-art methods and has the potential to advance dMRI enhancement.

End-to-End Model-based Deep Learning for Dual-Energy Computed Tomography Material Decomposition

Dual energy X-ray Computed Tomography (DECT) enables to automatically decompose materials in clinical images without the manual segmentation using the dependency of the X-ray linear attenuation with energy. In this work we propose a deep learning procedure called End-to-End Material Decomposition (E2E-DEcomp) for quantitative material decomposition which directly convert the CT projection data into material images. The algorithm is based on incorporating the knowledge of the spectral model DECT system into the deep learning training loss and combining a data-learned prior in the material image domain. Furthermore, the training does not require any energy-based images in the dataset but rather only sinogram and material images. We show the effectiveness of the proposed direct E2E-DEcomp method on the AAPM spectral CT dataset (Sidky and Pan, 2023) compared with state of the art supervised deep learning networks.

Rotational Augmented Noise2Inverse for Low-dose Computed Tomography Reconstruction

In this work, we present a novel self-supervised method for Low Dose Computed Tomography (LDCT) reconstruction. Reducing the radiation dose to patients during a CT scan is a crucial challenge since the quality of the reconstruction highly degrades because of low photons or limited measurements. Supervised deep learning methods have shown the ability to remove noise in images but require accurate ground truth which can be obtained only by performing additional high-radiation CT scans. Therefore, we propose a novel self-supervised framework for LDCT, in which ground truth is not required for training the convolutional neural network (CNN). Based on the Noise2Inverse (N2I) method, we enforce in the training loss the equivariant property of rotation transformation, which is induced by the CT imaging system, to improve the quality of the CT image in a lower dose. Numerical and experimental results show that the reconstruction accuracy of N2I with sparse views is degrading while the proposed rotational augmented Noise2Inverse (RAN2I) method keeps better image quality over a different range of sampling angles. Finally, the quantitative results demonstrate that RAN2I achieves higher image quality compared to N2I, and experimental results of RAN2I on real projection data show comparable performance to supervised learning.

Systematic Review on Learning-based Spectral CT

Spectral computed tomography (CT) has recently emerged as an advanced version of medical CT and significantly improves conventional (single-energy) CT. Spectral CT has two main forms: dual-energy computed tomography (DECT) and photon-counting computed tomography (PCCT), which offer image improvement, material decomposition, and feature quantification relative to conventional CT. However, the inherent challenges of spectral CT, evidenced by data and image artifacts, remain a bottleneck for clinical applications. To address these problems, machine learning techniques have been widely applied to spectral CT. In this review, we present the state-of-the-art data-driven techniques for spectral CT.

Multi-Channel Convolutional Analysis Operator Learning for Dual-Energy CT Reconstruction

Objective. Dual-energy computed tomography (DECT) has the potential to improve contrast, reduce artifacts and the ability to perform material decomposition in advanced imaging applications. The increased number or measurements results with a higher radiation dose and it is therefore essential to reduce either number of projections per energy or the source X-ray intensity, but this makes tomographic reconstruction more ill-posed. Approach. We developed the multi-channel convolutional analysis operator learning (MCAOL) method to exploit common spatial features within attenuation images at different energies and we propose an optimization method which jointly reconstructs the attenuation images at low and high energies with a mixed norm regularization on the sparse features obtained by pre-trained convolutional filters through the convolutional analysis operator learning (CAOL) algorithm. Main results. Extensive experiments with simulated and real computed tomography (CT) data were performed to validate the effectiveness of the proposed methods and we reported increased reconstruction accuracy compared to CAOL and iterative methods with single and joint total-variation (TV) regularization. Significance. Qualitative and quantitative results on sparse-views and low-dose DECT demonstrate that the proposed MCAOL method outperforms both CAOL applied on each energy independently and several existing state-of-the-art model-based iterative reconstruction (MBIR) techniques, thus paving the way for dose reduction.

Regularization by Denoising Sub-sampled Newton Method for Spectral CT Multi-Material Decomposition

Spectral Computed Tomography (CT) is an emerging technology that enables to estimate the concentration of basis materials within a scanned object by exploiting different photon energy spectra. In this work, we aim at efficiently solving a model-based maximum-a-posterior problem to reconstruct multi-materials images with application to spectral CT. In particular, we propose to solve a regularized optimization problem based on a plug-in image-denoising function using a randomized second order method. By approximating the Newton step using a sketching of the Hessian of the likelihood function, it is possible to reduce the complexity while retaining the complex prior structure given by the data-driven regularizer. We exploit a non-uniform block sub-sampling of the Hessian with inexact but efficient Conjugate gradient updates that require only Jacobian-vector products for denoising term. Finally, we show numerical and experimental results for spectral CT materials decomposition.