PMC-LLaMA: Further Finetuning LLaMA on Medical Papers

Large Language Models (LLMs) have showcased remarkable capabilities in natural language understanding in various domains. These models can usually behave well on daily dialog, or question answering scenarios, however, in areas that value precision, for example, in medical applications, they often exhibit unsatisfactory performance due to a lack of domain-specific knowledge. In this report, we introduce PMC-LLaMA, an open-source language model that is acquired by fine-tuning an open-source language model on a total of 4.8 million biomedical academic papers for further injecting medical knowledge, enhancing its capability in medical domain. Our preliminary evaluations are conducted on three biomedical QA datasets, including PubMedQA, MedMCQA, and USMLE, showing that the our model after finetuning, i.e., PMC-LLaMA, demonstrates better understanding of biomedical domain-specific concepts, thus achieving high performance on QA benchmarks. The model and codes, along with an online demo, are publicly available.

Multi-modal Prompting for Low-Shot Temporal Action Localization

In this paper, we consider the problem of temporal action localization under low-shot (zero-shot & few-shot) scenario, with the goal of detecting and classifying the action instances from arbitrary categories within some untrimmed videos, even not seen at training time. We adopt a Transformer-based two-stage action localization architecture with class-agnostic action proposal, followed by open-vocabulary classification. We make the following contributions. First, to compensate image-text foundation models with temporal motions, we improve category-agnostic action proposal by explicitly aligning embeddings of optical flows, RGB and texts, which has largely been ignored in existing low-shot methods. Second, to improve open-vocabulary action classification, we construct classifiers with strong discriminative power, i.e., avoid lexical ambiguities. To be specific, we propose to prompt the pre-trained CLIP text encoder either with detailed action descriptions (acquired from large-scale language models), or visually-conditioned instance-specific prompt vectors. Third, we conduct thorough experiments and ablation studies on THUMOS14 and ActivityNet1.3, demonstrating the superior performance of our proposed model, outperforming existing state-of-the-art approaches by one significant margin.

DR2: Diffusion-based Robust Degradation Remover for Blind Face Restoration

Blind face restoration usually synthesizes degraded low-quality data with a pre-defined degradation model for training, while more complex cases could happen in the real world. This gap between the assumed and actual degradation hurts the restoration performance where artifacts are often observed in the output. However, it is expensive and infeasible to include every type of degradation to cover real-world cases in the training data. To tackle this robustness issue, we propose Diffusion-based Robust Degradation Remover (DR2) to first transform the degraded image to a coarse but degradation-invariant prediction, then employ an enhancement module to restore the coarse prediction to a high-quality image. By leveraging a well-performing denoising diffusion probabilistic model, our DR2 diffuses input images to a noisy status where various types of degradation give way to Gaussian noise, and then captures semantic information through iterative denoising steps. As a result, DR2 is robust against common degradation (e.g. blur, resize, noise and compression) and compatible with different designs of enhancement modules. Experiments in various settings show that our framework outperforms state-of-the-art methods on heavily degraded synthetic and real-world datasets.

Boundary-aware Supervoxel-level Iteratively Refined Interactive 3D Image Segmentation with Multi-agent Reinforcement Learning

Interactive segmentation has recently been explored to effectively and efficiently harvest high-quality segmentation masks by iteratively incorporating user hints. While iterative in nature, most existing interactive segmentation methods tend to ignore the dynamics of successive interactions and take each interaction independently. We here propose to model iterative interactive image segmentation with a Markov decision process (MDP) and solve it with reinforcement learning (RL) where each voxel is treated as an agent. Considering the large exploration space for voxel-wise prediction and the dependence among neighboring voxels for the segmentation tasks, multi-agent reinforcement learning is adopted, where the voxel-level policy is shared among agents. Considering that boundary voxels are more important for segmentation, we further introduce a boundary-aware reward, which consists of a global reward in the form of relative cross-entropy gain, to update the policy in a constrained direction, and a boundary reward in the form of relative weight, to emphasize the correctness of boundary predictions. To combine the advantages of different types of interactions, i.e., simple and efficient for point-clicking, and stable and robust for scribbles, we propose a supervoxel-clicking based interaction design. Experimental results on four benchmark datasets have shown that the proposed method significantly outperforms the state-of-the-arts, with the advantage of fewer interactions, higher accuracy, and enhanced robustness.

DiffusionSeg: Adapting Diffusion Towards Unsupervised Object Discovery

Learning from a large corpus of data, pre-trained models have achieved impressive progress nowadays. As popular generative pre-training, diffusion models capture both low-level visual knowledge and high-level semantic relations. In this paper, we propose to exploit such knowledgeable diffusion models for mainstream discriminative tasks, i.e., unsupervised object discovery: saliency segmentation and object localization. However, the challenges exist as there is one structural difference between generative and discriminative models, which limits the direct use. Besides, the lack of explicitly labeled data significantly limits performance in unsupervised settings. To tackle these issues, we introduce DiffusionSeg, one novel synthesis-exploitation framework containing two-stage strategies. To alleviate data insufficiency, we synthesize abundant images, and propose a novel training-free AttentionCut to obtain masks in the first synthesis stage. In the second exploitation stage, to bridge the structural gap, we use the inversion technique, to map the given image back to diffusion features. These features can be directly used by downstream architectures. Extensive experiments and ablation studies demonstrate the superiority of adapting diffusion for unsupervised object discovery.

Controllable Mesh Generation Through Sparse Latent Point Diffusion Models

Mesh generation is of great value in various applications involving computer graphics and virtual content, yet designing generative models for meshes is challenging due to their irregular data structure and inconsistent topology of meshes in the same category. In this work, we design a novel sparse latent point diffusion model for mesh generation. Our key insight is to regard point clouds as an intermediate representation of meshes, and model the distribution of point clouds instead. While meshes can be generated from point clouds via techniques like Shape as Points (SAP), the challenges of directly generating meshes can be effectively avoided. To boost the efficiency and controllability of our mesh generation method, we propose to further encode point clouds to a set of sparse latent points with point-wise semantic meaningful features, where two DDPMs are trained in the space of sparse latent points to respectively model the distribution of the latent point positions and features at these latent points. We find that sampling in this latent space is faster than directly sampling dense point clouds. Moreover, the sparse latent points also enable us to explicitly control both the overall structures and local details of the generated meshes. Extensive experiments are conducted on the ShapeNet dataset, where our proposed sparse latent point diffusion model achieves superior performance in terms of generation quality and controllability when compared to existing methods.

PMC-CLIP: Contrastive Language-Image Pre-training using Biomedical Documents

Foundation models trained on large-scale dataset gain a recent surge in CV and NLP. In contrast, development in biomedical domain lags far behind due to data scarcity. To address this issue, we build and release PMC-OA, a biomedical dataset with 1.6M image-caption pairs collected from PubMedCentral's OpenAccess subset, which is 8 times larger than before. PMC-OA covers diverse modalities or diseases, with majority of the image-caption samples aligned at finer-grained level, i.e., subfigure and subcaption. While pretraining a CLIP-style model on PMC-OA, our model named PMC-CLIP achieves state-of-the-art results on various downstream tasks, including image-text retrieval on ROCO, MedMNIST image classification, Medical VQA, i.e. +8.1% R@10 on image-text retrieval, +3.9% accuracy on image classification.

Graph Decision Transformer

Offline reinforcement learning (RL) is a challenging task, whose objective is to learn policies from static trajectory data without interacting with the environment. Recently, offline RL has been viewed as a sequence modeling problem, where an agent generates a sequence of subsequent actions based on a set of static transition experiences. However, existing approaches that use transformers to attend to all tokens naively can overlook the dependencies between different tokens and limit long-term dependency learning. In this paper, we propose the Graph Decision Transformer (GDT), a novel offline RL approach that models the input sequence into a causal graph to capture potential dependencies between fundamentally different concepts and facilitate temporal and causal relationship learning. GDT uses a graph transformer to process the graph inputs with relation-enhanced mechanisms, and an optional sequence transformer to handle fine-grained spatial information in visual tasks. Our experiments show that GDT matches or surpasses the performance of state-of-the-art offline RL methods on image-based Atari and OpenAI Gym.

Knowledge-enhanced Pre-training for Auto-diagnosis of Chest Radiology Images

Despite of the success of multi-modal foundation models pre-trained on large-scale data in natural language understanding and vision recognition, its counterpart in medical and clinical domains remains preliminary, due to the fine-grained recognition nature of the medical tasks with high demands on domain knowledge. Here, we propose a knowledge-enhanced vision-language pre-training approach for auto-diagnosis on chest X-ray images. The algorithm, named Knowledge-enhanced Auto Diagnosis~(KAD), first trains a knowledge encoder based on an existing medical knowledge graph, i.e., learning neural embeddings of the definitions and relationships between medical concepts and then leverages the pre-trained knowledge encoder to guide the visual representation learning with paired chest X-rays and radiology reports. We experimentally validate KAD's effectiveness on three external X-ray datasets. The zero-shot performance of KAD is not only comparable to that of the fully-supervised models but also, for the first time, superior to the average of three expert radiologists for three (out of five) pathologies with statistical significance. When the few-shot annotation is available, KAD also surpasses all existing approaches in finetuning settings, demonstrating the potential for application in different clinical scenarios.