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Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages


Aug 24, 2022
Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke

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* Accepted at MICCAI 2022, Code: https://github.com/funkelab/linajea 

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Panoptic segmentation with highly imbalanced semantic labels


Apr 02, 2022
Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Andrew Janowczyk, Inti Zlobec, Dagmar Kainmueller

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How Shift Equivariance Impacts Metric Learning for Instance Segmentation


Jan 14, 2021
Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller

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An Auxiliary Task for Learning Nuclei Segmentation in 3D Microscopy Images


Feb 07, 2020
Peter Hirsch, Dagmar Kainmueller

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* code available at: https://github.com/Kainmueller-Lab/aux_cpv_loss 

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PatchPerPix for Instance Segmentation


Jan 21, 2020
Peter Hirsch, Lisa Mais, Dagmar Kainmueller

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