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Jan Funke

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Tracking by weakly-supervised learning and graph optimization for whole-embryo C. elegans lineages

Aug 24, 2022
Peter Hirsch, Caroline Malin-Mayor, Anthony Santella, Stephan Preibisch, Dagmar Kainmueller, Jan Funke

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* Accepted at MICCAI 2022, Code: https://github.com/funkelab/linajea

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Discriminative Attribution from Counterfactuals

Sep 28, 2021
Nils Eckstein, Alexander S. Bates, Gregory S. X. E. Jefferis, Jan Funke

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How Shift Equivariance Impacts Metric Learning for Instance Segmentation

Jan 14, 2021
Josef Lorenz Rumberger, Xiaoyan Yu, Peter Hirsch, Melanie Dohmen, Vanessa Emanuela Guarino, Ashkan Mokarian, Lisa Mais, Jan Funke, Dagmar Kainmueller

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Microtubule Tracking in Electron Microscopy Volumes

Sep 17, 2020
Nils Eckstein, Julia Buhmann, Matthew Cook, Jan Funke

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* Accepted at MICCAI 2020

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Instance Separation Emerges from Inpainting

Feb 28, 2020
Steffen Wolf, Fred A. Hamprecht, Jan Funke

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Synaptic partner prediction from point annotations in insect brains

Jul 16, 2018
Julia Buhmann, Renate Krause, Rodrigo Ceballos Lentini, Nils Eckstein, Matthew Cook, Srinivas Turaga, Jan Funke

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Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain

May 07, 2018
Larissa Heinrich, Jan Funke, Constantin Pape, Juan Nunez-Iglesias, Stephan Saalfeld

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A Deep Structured Learning Approach Towards Automating Connectome Reconstruction from 3D Electron Micrographs

Sep 24, 2017
Jan Funke, Fabian David Tschopp, William Grisaitis, Arlo Sheridan, Chandan Singh, Stephan Saalfeld, Srinivas C. Turaga

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The Candidate Multi-Cut for Cell Segmentation

Jul 04, 2017
Jan Funke, Chong Zhang, Tobias Pietzsch, Stephan Saalfeld

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TED: A Tolerant Edit Distance for Segmentation Evaluation

Feb 01, 2016
Jan Funke, Francesc Moreno-Noguer, Albert Cardona, Matthew Cook

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