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Karin Verspoor

RMIT University, University of Melbourne

LED down the rabbit hole: exploring the potential of global attention for biomedical multi-document summarisation


Sep 19, 2022
Yulia Otmakhova, Hung Thinh Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor, Jey Han Lau

* SDP Workshop at COLING 2022 

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Cross-modal Clinical Graph Transformer for Ophthalmic Report Generation


Jun 04, 2022
Mingjie Li, Wenjia Cai, Karin Verspoor, Shirui Pan, Xiaodan Liang, Xiaojun Chang

* CVPR 2022 (Poster) 

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Improving negation detection with negation-focused pre-training


May 09, 2022
Thinh Hung Truong, Timothy Baldwin, Trevor Cohn, Karin Verspoor


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ITTC @ TREC 2021 Clinical Trials Track


Feb 16, 2022
Thinh Hung Truong, Yulia Otmakhova, Rahmad Mahendra, Timothy Baldwin, Jey Han Lau, Trevor Cohn, Lawrence Cavedon, Damiano Spina, Karin Verspoor

* 7 pages 

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MPVNN: Mutated Pathway Visible Neural Network Architecture for Interpretable Prediction of Cancer-specific Survival Risk


Feb 02, 2022
Gourab Ghosh Roy, Nicholas Geard, Karin Verspoor, Shan He

* 11 pages, 2 figures 

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Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT


Jan 06, 2022
Aparna Elangovan, Yuan Li, Douglas E. V. Pires, Melissa J. Davis, Karin Verspoor

* BMC Bioinformatics 23, 4 (2022) 
* BMC BioInformatics 

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Impact of detecting clinical trial elements in exploration of COVID-19 literature


May 25, 2021
Simon Šuster, Karin Verspoor, Timothy Baldwin, Jey Han Lau, Antonio Jimeno Yepes, David Martinez, Yulia Otmakhova

* Accepted at HealthNLP'21 

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Memorization vs. Generalization: Quantifying Data Leakage in NLP Performance Evaluation


Feb 03, 2021
Aparna Elangovan, Jiayuan He, Karin Verspoor

* To appear EACL 2021 

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Assigning function to protein-protein interactions: a weakly supervised BioBERT based approach using PubMed abstracts


Sep 29, 2020
Aparna Elangovan, Melissa Davis, Karin Verspoor


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