University of Minnesota
Abstract:While state-of-the-art image generation models achieve remarkable visual quality, their internal generative processes remain a "black box." This opacity limits human observation and intervention, and poses a barrier to ensuring model reliability, safety, and control. Furthermore, their non-human-like workflows make them difficult for human observers to interpret. To address this, we introduce the Chain-of-Image Generation (CoIG) framework, which reframes image generation as a sequential, semantic process analogous to how humans create art. Similar to the advantages in monitorability and performance that Chain-of-Thought (CoT) brought to large language models (LLMs), CoIG can produce equivalent benefits in text-to-image generation. CoIG utilizes an LLM to decompose a complex prompt into a sequence of simple, step-by-step instructions. The image generation model then executes this plan by progressively generating and editing the image. Each step focuses on a single semantic entity, enabling direct monitoring. We formally assess this property using two novel metrics: CoIG Readability, which evaluates the clarity of each intermediate step via its corresponding output; and Causal Relevance, which quantifies the impact of each procedural step on the final generated image. We further show that our framework mitigates entity collapse by decomposing the complex generation task into simple subproblems, analogous to the procedural reasoning employed by CoT. Our experimental results indicate that CoIG substantially enhances quantitative monitorability while achieving competitive compositional robustness compared to established baseline models. The framework is model-agnostic and can be integrated with any image generation model.
Abstract:Continuous cardiovascular monitoring can play a key role in precision health. However, some fundamental cardiac biomarkers of interest, including stroke volume and cardiac output, require invasive measurements, e.g., arterial pressure waveforms (APW). As a non-invasive alternative, photoplethysmography (PPG) measurements are routinely collected in hospital settings. Unfortunately, the prediction of key cardiac biomarkers from PPG instead of APW remains an open challenge, further complicated by the scarcity of annotated PPG measurements. As a solution, we propose a hybrid approach that uses hemodynamic simulations and unlabeled clinical data to estimate cardiovascular biomarkers directly from PPG signals. Our hybrid model combines a conditional variational autoencoder trained on paired PPG-APW data with a conditional density estimator of cardiac biomarkers trained on labeled simulated APW segments. As a key result, our experiments demonstrate that the proposed approach can detect fluctuations of cardiac output and stroke volume and outperform a supervised baseline in monitoring temporal changes in these biomarkers.
Abstract:While Vision Transformers (ViT) have demonstrated remarkable performance across diverse tasks, their computational demands are substantial, scaling quadratically with the number of processed tokens. Compact attention representations, reflecting token interaction distributions, can guide early detection and reduction of less salient tokens prior to attention computation. Motivated by this, we present SParsification with attentiOn dynamics via Token relevance (SPOT), a framework for early detection of redundant tokens within ViTs that leverages token embeddings, interactions, and attention dynamics across layers to infer token importance, resulting in a more context-aware and interpretable relevance detection process. SPOT informs token sparsification and facilitates the elimination of such tokens, improving computational efficiency without sacrificing performance. SPOT employs computationally lightweight predictors that can be plugged into various ViT architectures and learn to derive effective input-specific token prioritization across layers. Its versatile design supports a range of performance levels adaptable to varying resource constraints. Empirical evaluations demonstrate significant efficiency gains of up to 40% compared to standard ViTs, while maintaining or even improving accuracy. Code and models are available at https://github.com/odedsc/SPOT .




Abstract:Smart wearables enable continuous tracking of established biomarkers such as heart rate, heart rate variability, and blood oxygen saturation via photoplethysmography (PPG). Beyond these metrics, PPG waveforms contain richer physiological information, as recent deep learning (DL) studies demonstrate. However, DL models often rely on features with unclear physiological meaning, creating a tension between predictive power, clinical interpretability, and sensor design. We address this gap by introducing PPGen, a biophysical model that relates PPG signals to interpretable physiological and optical parameters. Building on PPGen, we propose hybrid amortized inference (HAI), enabling fast, robust, and scalable estimation of relevant physiological parameters from PPG signals while correcting for model misspecification. In extensive in-silico experiments, we show that HAI can accurately infer physiological parameters under diverse noise and sensor conditions. Our results illustrate a path toward PPG models that retain the fidelity needed for DL-based features while supporting clinical interpretation and informed hardware design.




Abstract:Whole-body hemodynamics simulators, which model blood flow and pressure waveforms as functions of physiological parameters, are now essential tools for studying cardiovascular systems. However, solving the corresponding inverse problem of mapping observations (e.g., arterial pressure waveforms at specific locations in the arterial network) back to plausible physiological parameters remains challenging. Leveraging recent advances in simulation-based inference, we cast this problem as statistical inference by training an amortized neural posterior estimator on a newly built large dataset of cardiac simulations that we publicly release. To better align simulated data with real-world measurements, we incorporate stochastic elements modeling exogenous effects. The proposed framework can further integrate in-vivo data sources to refine its predictive capabilities on real-world data. In silico, we demonstrate that the proposed framework enables finely quantifying uncertainty associated with individual measurements, allowing trustworthy prediction of four biomarkers of clinical interest--namely Heart Rate, Cardiac Output, Systemic Vascular Resistance, and Left Ventricular Ejection Time--from arterial pressure waveforms and photoplethysmograms. Furthermore, we validate the framework in vivo, where our method accurately captures temporal trends in CO and SVR monitoring on the VitalDB dataset. Finally, the predictive error made by the model monotonically increases with the predicted uncertainty, thereby directly supporting the automatic rejection of unusable measurements.




Abstract:Autoregressive modeling has been a huge success in the field of natural language processing (NLP). Recently, autoregressive models have emerged as a significant area of focus in computer vision, where they excel in producing high-quality visual content. Autoregressive models in NLP typically operate on subword tokens. However, the representation strategy in computer vision can vary in different levels, \textit{i.e.}, pixel-level, token-level, or scale-level, reflecting the diverse and hierarchical nature of visual data compared to the sequential structure of language. This survey comprehensively examines the literature on autoregressive models applied to vision. To improve readability for researchers from diverse research backgrounds, we start with preliminary sequence representation and modeling in vision. Next, we divide the fundamental frameworks of visual autoregressive models into three general sub-categories, including pixel-based, token-based, and scale-based models based on the strategy of representation. We then explore the interconnections between autoregressive models and other generative models. Furthermore, we present a multi-faceted categorization of autoregressive models in computer vision, including image generation, video generation, 3D generation, and multi-modal generation. We also elaborate on their applications in diverse domains, including emerging domains such as embodied AI and 3D medical AI, with about 250 related references. Finally, we highlight the current challenges to autoregressive models in vision with suggestions about potential research directions. We have also set up a Github repository to organize the papers included in this survey at: \url{https://github.com/ChaofanTao/Autoregressive-Models-in-Vision-Survey}.




Abstract:Driven by steady progress in generative modeling, simulation-based inference (SBI) has enabled inference over stochastic simulators. However, recent work has demonstrated that model misspecification can harm SBI's reliability. This work introduces robust posterior estimation (ROPE), a framework that overcomes model misspecification with a small real-world calibration set of ground truth parameter measurements. We formalize the misspecification gap as the solution of an optimal transport problem between learned representations of real-world and simulated observations. Assuming the prior distribution over the parameters of interest is known and well-specified, our method offers a controllable balance between calibrated uncertainty and informative inference under all possible misspecifications of the simulator. Our empirical results on four synthetic tasks and two real-world problems demonstrate that ROPE outperforms baselines and consistently returns informative and calibrated credible intervals.




Abstract:Tokens or patches within Vision Transformers (ViT) lack essential semantic information, unlike their counterparts in natural language processing (NLP). Typically, ViT tokens are associated with rectangular image patches that lack specific semantic context, making interpretation difficult and failing to effectively encapsulate information. We introduce a novel transformer model, Semantic Vision Transformers (sViT), which leverages recent progress on segmentation models to design novel tokenizer strategies. sViT effectively harnesses semantic information, creating an inductive bias reminiscent of convolutional neural networks while capturing global dependencies and contextual information within images that are characteristic of transformers. Through validation using real datasets, sViT demonstrates superiority over ViT, requiring less training data while maintaining similar or superior performance. Furthermore, sViT demonstrates significant superiority in out-of-distribution generalization and robustness to natural distribution shifts, attributed to its scale invariance semantic characteristic. Notably, the use of semantic tokens significantly enhances the model's interpretability. Lastly, the proposed paradigm facilitates the introduction of new and powerful augmentation techniques at the token (or segment) level, increasing training data diversity and generalization capabilities. Just as sentences are made of words, images are formed by semantic objects; our proposed methodology leverages recent progress in object segmentation and takes an important and natural step toward interpretable and robust vision transformers.
Abstract:Current approaches to group fairness in federated learning assume the existence of predefined and labeled sensitive groups during training. However, due to factors ranging from emerging regulations to dynamics and location-dependency of protected groups, this assumption may be unsuitable in many real-world scenarios. In this work, we propose a new approach to guarantee group fairness that does not rely on any predefined definition of sensitive groups or additional labels. Our objective allows the federation to learn a Pareto efficient global model ensuring worst-case group fairness and it enables, via a single hyper-parameter, trade-offs between fairness and utility, subject only to a group size constraint. This implies that any sufficiently large subset of the population is guaranteed to receive at least a minimum level of utility performance from the model. The proposed objective encompasses existing approaches as special cases, such as empirical risk minimization and subgroup robustness objectives from centralized machine learning. We provide an algorithm to solve this problem in federation that enjoys convergence and excess risk guarantees. Our empirical results indicate that the proposed approach can effectively improve the worst-performing group that may be present without unnecessarily hurting the average performance, exhibits superior or comparable performance to relevant baselines, and achieves a large set of solutions with different fairness-utility trade-offs.
Abstract:Over the past decades, hemodynamics simulators have steadily evolved and have become tools of choice for studying cardiovascular systems in-silico. While such tools are routinely used to simulate whole-body hemodynamics from physiological parameters, solving the corresponding inverse problem of mapping waveforms back to plausible physiological parameters remains both promising and challenging. Motivated by advances in simulation-based inference (SBI), we cast this inverse problem as statistical inference. In contrast to alternative approaches, SBI provides \textit{posterior distributions} for the parameters of interest, providing a \textit{multi-dimensional} representation of uncertainty for \textit{individual} measurements. We showcase this ability by performing an in-silico uncertainty analysis of five biomarkers of clinical interest comparing several measurement modalities. Beyond the corroboration of known facts, such as the feasibility of estimating heart rate, our study highlights the potential of estimating new biomarkers from standard-of-care measurements. SBI reveals practically relevant findings that cannot be captured by standard sensitivity analyses, such as the existence of sub-populations for which parameter estimation exhibits distinct uncertainty regimes. Finally, we study the gap between in-vivo and in-silico with the MIMIC-III waveform database and critically discuss how cardiovascular simulations can inform real-world data analysis.