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Seeded iterative clustering for histology region identification


Nov 14, 2022
Eduard Chelebian, Francesco Ciompi, Carolina Wählby

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Mitosis domain generalization in histopathology images -- The MIDOG challenge


Apr 06, 2022
Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Nasir Rajpoot, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Mitko Veta, Katharina Breininger

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* 19 pages, 9 figures, summary paper of the 2021 MICCAI MIDOG challenge 

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Automated risk classification of colon biopsies based on semantic segmentation of histopathology images


Sep 16, 2021
John-Melle Bokhorsta, Iris D. Nagtegaal, Filippo Fraggetta, Simona Vatrano, Wilma Mesker, Michael Vieth, Jeroen van der Laak, Francesco Ciompi

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Quantifying the Scanner-Induced Domain Gap in Mitosis Detection


Mar 30, 2021
Marc Aubreville, Christof Bertram, Mitko Veta, Robert Klopfleisch, Nikolas Stathonikos, Katharina Breininger, Natalie ter Hoeve, Francesco Ciompi, Andreas Maier

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* 3 pages, 1 figure, 1 table, submitted as short paper to MIDL 

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Automated Scoring of Nuclear Pleomorphism Spectrum with Pathologist-level Performance in Breast Cancer


Dec 24, 2020
Caner Mercan, Maschenka Balkenhol, Roberto Salgado, Mark Sherman, Philippe Vielh, Willem Vreuls, Antonio Polonia, Hugo M. Horlings, Wilko Weichert, Jodi M. Carter, Peter Bult, Matthias Christgen, Carsten Denkert, Koen van de Vijver, Jeroen van der Laak, Francesco Ciompi

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* 16 pages, 11 figures 

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HookNet: multi-resolution convolutional neural networks for semantic segmentation in histopathology whole-slide images


Jun 22, 2020
Mart van Rijthoven, Maschenka Balkenhol, Karina Siliņa, Jeroen van der Laak, Francesco Ciompi

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Extending Unsupervised Neural Image Compression With Supervised Multitask Learning


Apr 15, 2020
David Tellez, Diederik Hoppener, Cornelis Verhoef, Dirk Grunhagen, Pieter Nierop, Michal Drozdzal, Jeroen van der Laak, Francesco Ciompi

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* Medical Imaging with Deep Learning 2020 (MIDL20) 

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Virtual staining for mitosis detection in Breast Histopathology


Mar 17, 2020
Caner Mercan, Germonda Reijnen-Mooij, David Tellez Martin, Johannes Lotz, Nick Weiss, Marcel van Gerven, Francesco Ciompi

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* 5 pages, 4 figures. Accepted for publication at the IEEE International Symposium on Biomedical Imaging (ISBI), 2020 

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Needles in Haystacks: On Classifying Tiny Objects in Large Images


Aug 16, 2019
Nick Pawlowski, Suvrat Bhooshan, Nicolas Ballas, Francesco Ciompi, Ben Glocker, Michal Drozdzal

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