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HookNet: multi-resolution convolutional neural networks for semantic segmentation in histopathology whole-slide images

Jun 22, 2020
Mart van Rijthoven, Maschenka Balkenhol, Karina Siliņa, Jeroen van der Laak, Francesco Ciompi


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Detection of prostate cancer in whole-slide images through end-to-end training with image-level labels

Jun 05, 2020
Hans Pinckaers, Wouter Bulten, Jeroen van der Laak, Geert Litjens


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Extending Unsupervised Neural Image Compression With Supervised Multitask Learning

Apr 15, 2020
David Tellez, Diederik Hoppener, Cornelis Verhoef, Dirk Grunhagen, Pieter Nierop, Michal Drozdzal, Jeroen van der Laak, Francesco Ciompi

* Medical Imaging with Deep Learning 2020 (MIDL20) 

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Artificial Intelligence Assistance Significantly Improves Gleason Grading of Prostate Biopsies by Pathologists

Feb 11, 2020
Wouter Bulten, Maschenka Balkenhol, Jean-Joël Awoumou Belinga, Américo Brilhante, Aslı Çakır, Xavier Farré, Katerina Geronatsiou, Vincent Molinié, Guilherme Pereira, Paromita Roy, Günter Saile, Paulo Salles, Ewout Schaafsma, Joëlle Tschui, Anne-Marie Vos, Hester van Boven, Robert Vink, Jeroen van der Laak, Christina Hulsbergen-van de Kaa, Geert Litjens

* 21 pages, 5 figures 

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Automated Gleason Grading of Prostate Biopsies using Deep Learning

Jul 18, 2019
Wouter Bulten, Hans Pinckaers, Hester van Boven, Robert Vink, Thomas de Bel, Bram van Ginneken, Jeroen van der Laak, Christina Hulsbergen-van de Kaa, Geert Litjens

* 13 pages, 6 figures 

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Quantifying the effects of data augmentation and stain color normalization in convolutional neural networks for computational pathology

Feb 18, 2019
David Tellez, Geert Litjens, Peter Bandi, Wouter Bulten, John-Melle Bokhorst, Francesco Ciompi, Jeroen van der Laak


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Neural Image Compression for Gigapixel Histopathology Image Analysis

Nov 07, 2018
David Tellez, Geert Litjens, Jeroen van der Laak, Francesco Ciompi


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Whole-Slide Mitosis Detection in H&E Breast Histology Using PHH3 as a Reference to Train Distilled Stain-Invariant Convolutional Networks

Aug 17, 2018
David Tellez, Maschenka Balkenhol, Irene Otte-Holler, Rob van de Loo, Rob Vogels, Peter Bult, Carla Wauters, Willem Vreuls, Suzanne Mol, Nico Karssemeijer, Geert Litjens, Jeroen van der Laak, Francesco Ciompi

* Accepted to appear in IEEE Transactions on Medical Imaging 

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Epithelium segmentation using deep learning in H&E-stained prostate specimens with immunohistochemistry as reference standard

Aug 17, 2018
Wouter Bulten, Péter Bándi, Jeffrey Hoven, Rob van de Loo, Johannes Lotz, Nick Weiss, Jeroen van der Laak, Bram van Ginneken, Christina Hulsbergen-van de Kaa, Geert Litjens


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The importance of stain normalization in colorectal tissue classification with convolutional networks

May 23, 2017
Francesco Ciompi, Oscar Geessink, Babak Ehteshami Bejnordi, Gabriel Silva de Souza, Alexi Baidoshvili, Geert Litjens, Bram van Ginneken, Iris Nagtegaal, Jeroen van der Laak

* Published in Proceedings of IEEE International Symposium on Biomedical Imaging (ISBI) 2017 

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Context-aware stacked convolutional neural networks for classification of breast carcinomas in whole-slide histopathology images

May 10, 2017
Babak Ehteshami Bejnordi, Guido Zuidhof, Maschenka Balkenhol, Meyke Hermsen, Peter Bult, Bram van Ginneken, Nico Karssemeijer, Geert Litjens, Jeroen van der Laak


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Comparison of Different Methods for Tissue Segmentation in Histopathological Whole-Slide Images

Apr 03, 2017
Péter Bándi, Rob van de Loo, Milad Intezar, Daan Geijs, Francesco Ciompi, Bram van Ginneken, Jeroen van der Laak, Geert Litjens

* Accepted for poster presentation at the IEEE International Symposium on Biomedical Imaging (ISBI) 2017 

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Deep learning-based assessment of tumor-associated stroma for diagnosing breast cancer in histopathology images

Feb 19, 2017
Babak Ehteshami Bejnordi, Jimmy Linz, Ben Glass, Maeve Mullooly, Gretchen L Gierach, Mark E Sherman, Nico Karssemeijer, Jeroen van der Laak, Andrew H Beck

* 5 pages, 2 figures, ISBI 2017 Submission 

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