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Mitosis domain generalization in histopathology images -- The MIDOG challenge


Apr 06, 2022
Marc Aubreville, Nikolas Stathonikos, Christof A. Bertram, Robert Klopleisch, Natalie ter Hoeve, Francesco Ciompi, Frauke Wilm, Christian Marzahl, Taryn A. Donovan, Andreas Maier, Jack Breen, Nishant Ravikumar, Youjin Chung, Jinah Park, Ramin Nateghi, Fattaneh Pourakpour, Rutger H. J. Fick, Saima Ben Hadj, Mostafa Jahanifar, Nasir Rajpoot, Jakob Dexl, Thomas Wittenberg, Satoshi Kondo, Maxime W. Lafarge, Viktor H. Koelzer, Jingtang Liang, Yubo Wang, Xi Long, Jingxin Liu, Salar Razavi, April Khademi, Sen Yang, Xiyue Wang, Mitko Veta, Katharina Breininger

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* 19 pages, 9 figures, summary paper of the 2021 MICCAI MIDOG challenge 

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Pan-Tumor CAnine cuTaneous Cancer Histology (CATCH) Dataset


Jan 27, 2022
Frauke Wilm, Marco Fragoso, Christian Marzahl, Jingna Qiu, Christof A. Bertram, Robert Klopfleisch, Andreas Maier, Katharina Breininger, Marc Aubreville

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* Submitted to Scientific Data. 12 pages, 6 figures, 5 tables 

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Superpixel Pre-Segmentation of HER2 Slides for Efficient Annotation


Jan 19, 2022
Mathias Öttl, Jana Mönius, Christian Marzahl, Matthias Rübner, Carol I. Geppert, Arndt Hartmann, Matthias W. Beckmann, Peter Fasching, Andreas Maier, Ramona Erber, Katharina Breininger

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First steps on Gamification of Lung Fluid Cells Annotations in the Flower Domain


Nov 05, 2021
Sonja Kunzmann, Christian Marzahl, Felix Denzinger, Christof A. Bertram, Robert Klopfleisch, Katharina Breininger, Vincent Christlein, Andreas Maier

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* 6 pages, 4 figures 

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Inter-Species Cell Detection: Datasets on pulmonary hemosiderophages in equine, human and feline specimens


Aug 19, 2021
Christian Marzahl, Jenny Hill, Jason Stayt, Dorothee Bienzle, Lutz Welker, Frauke Wilm, Jörn Voigt, Marc Aubreville, Andreas Maier, Robert Klopfleisch, Katharina Breininger, Christof A. Bertram

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* Submitted to SCIENTIFIC DATA 

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Learning to be EXACT, Cell Detection for Asthma on Partially Annotated Whole Slide Images


Jan 13, 2021
Christian Marzahl, Christof A. Bertram, Frauke Wilm, Jörn Voigt, Ann K. Barton, Robert Klopfleisch, Katharina Breininger, Andreas Maier, Marc Aubreville

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* Submitted to BVM 

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How Many Annotators Do We Need? -- A Study on the Influence of Inter-Observer Variability on the Reliability of Automatic Mitotic Figure Assessment


Jan 08, 2021
Frauke Wilm, Christof A. Bertram, Christian Marzahl, Alexander Bartel, Taryn A. Donovan, Charles-Antoine Assenmacher, Kathrin Becker, Mark Bennett, Sarah Corner, Brieuc Cossic, Daniela Denk, Martina Dettwiler, Beatriz Garcia Gonzalez, Corinne Gurtner, Annika Lehmbecker, Sophie Merz, Stephanie Plog, Anja Schmidt, Rebecca C. Smedley, Marco Tecilla, Tuddow Thaiwong, Katharina Breininger, Matti Kiupel, Andreas Maier, Robert Klopfleisch, Marc Aubreville

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* Due to data inconsistencies experiments had to be repeated with a reduced number of annotators (17 in version 1). All findings of the previous version were reproducible. 7 pages, 2 figures, accepted at BVM workshop 2021 

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Dataset on Bi- and Multi-Nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors


Jan 05, 2021
Christof A. Bertram, Taryn A. Donovan, Marco Tecilla, Florian Bartenschlager, Marco Fragoso, Frauke Wilm, Christian Marzahl, Katharina Breininger, Andreas Maier, Robert Klopfleisch, Marc Aubreville

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* Accepted at BVM workshop 2021 

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Dogs as Model for Human Breast Cancer: A Completely Annotated Whole Slide Image Dataset


Aug 24, 2020
Marc Aubreville, Christof A. Bertram, Taryn A. Donovan, Christian Marzahl, Andreas Maier, Robert Klopfleisch

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* 11 pages, 5 figures 

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