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SuperWarp: Supervised Learning and Warping on U-Net for Invariant Subvoxel-Precise Registration


May 15, 2022
Sean I. Young, Yaël Balbastre, Adrian V. Dalca, William M. Wells, Juan Eugenio Iglesias, Bruce Fischl


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Learning the Effect of Registration Hyperparameters with HyperMorph


Mar 30, 2022
Andrew Hoopes, Malte Hoffmann, Douglas N. Greve, Bruce Fischl, John Guttag, Adrian V. Dalca

* Accepted for publication at the Journal of Machine Learning for Biomedical Imaging (MELBA) at https://www.melba-journal.org 

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SynthStrip: Skull-Stripping for Any Brain Image


Mar 18, 2022
Andrew Hoopes, Jocelyn S. Mora, Adrian V. Dalca, Bruce Fischl, Malte Hoffmann

* 18 pages, 8 figures, 7 tables, skull stripping, brain extraction, image synthesis, MRI contrast agnosticism, deep learning 

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SUD: Supervision by Denoising for Medical Image Segmentation


Feb 07, 2022
Sean I. Young, Adrian V. Dalca, Enzo Ferrante, Polina Golland, Bruce Fischl, Juan Eugenio Iglesias

* Author's manuscript for IEEE Trans. Pattern Anal. Mach. Intell 

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SynthSeg: Domain Randomisation for Segmentation of Brain MRI Scans of any Contrast and Resolution


Jul 20, 2021
Benjamin Billot, Douglas N. Greve, Oula Puonti, Axel Thielscher, Koen Van Leemput, Bruce Fischl, Adrian V. Dalca, Juan Eugenio Iglesias

* 20 pages, 11 figures, currently under review 

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Unsupervised learning of MRI tissue properties using MRI physics models


Jul 06, 2021
Divya Varadarajan, Katherine L. Bouman, Andre van der Kouwe, Bruce Fischl, Adrian V. Dalca

* 11 Pages, 9 figures 

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Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas


May 04, 2021
Adrià Casamitjana, Marco Lorenzi, Sebastiano Ferraris, Loc Peter, Marc Modat, Allison Stevens, Bruce Fischl, Tom Vercauteren, Juan Eugenio Iglesias


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HyperMorph: Amortized Hyperparameter Learning for Image Registration


Jan 04, 2021
Andrew Hoopes, Malte Hoffmann, Bruce Fischl, John Guttag, Adrian V. Dalca

* Keywords: Deformable Image Registration, Hyperparameter Tuning, Deep Learning, and Amortized Learning 

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Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast


Dec 24, 2020
Juan Eugenio Iglesias, Benjamin Billot, Yael Balbastre, Azadeh Tabari, John Conklin, Daniel C. Alexander, Polina Golland, Brian L. Edlow, Bruce Fischl


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3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology


Sep 11, 2020
Henry Tregidgo, Adria Casamitjana, Caitlin Latimer, Mitchell Kilgore, Eleanor Robinson, Emily Blackburn, Koen Van Leemput, Bruce Fischl, Adrian Dalca, Christine Mac Donald, Dirk Keene, Juan Eugenio Iglesias

* Accepted at MICCAI 2020 

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