An Information Retrieval and Extraction Tool for Covid-19 Related Papers

Background: The COVID-19 pandemic has caused severe impacts on health systems worldwide. Its critical nature and the increased interest of individuals and organizations to develop countermeasures to the problem has led to a surge of new studies in scientific journals. Objetive: We sought to develop a tool that incorporates, in a novel way, aspects of Information Retrieval (IR) and Extraction (IE) applied to the COVID-19 Open Research Dataset (CORD-19). The main focus of this paper is to provide researchers with a better search tool for COVID-19 related papers, helping them find reference papers and hightlight relevant entities in text. Method: We applied Latent Dirichlet Allocation (LDA) to model, based on research aspects, the topics of all English abstracts in CORD-19. Relevant named entities of each abstract were extracted and linked to the corresponding UMLS concept. Regular expressions and the K-Nearest Neighbors algorithm were used to rank relevant papers. Results: Our tool has shown the potential to assist researchers by automating a topic-based search of CORD-19 papers. Nonetheless, we identified that more fine-tuned topic modeling parameters and increased accuracy of the research aspect classifier model could lead to a more accurate and reliable tool. Conclusion: We emphasize the need of new automated tools to help researchers find relevant COVID-19 documents, in addition to automatically extracting useful information contained in them. Our work suggests that combining different algorithms and models could lead to new ways of browsing COVID-19 paper data.

Using Zero-shot Prompting in the Automatic Creation and Expansion of Topic Taxonomies for Tagging Retail Banking Transactions

This work presents an unsupervised method for automatically constructing and expanding topic taxonomies by using instruction-based fine-tuned LLMs (Large Language Models). We apply topic modeling and keyword extraction techniques to create initial topic taxonomies and LLMs to post-process the resulting terms and create a hierarchy. To expand an existing taxonomy with new terms, we use zero-shot prompting to find out where to add new nodes, which, to our knowledge, is the first work to present such an approach to taxonomy tasks. We use the resulting taxonomies to assign tags that characterize merchants from a retail bank dataset. To evaluate our work, we asked 12 volunteers to answer a two-part form in which we first assessed the quality of the taxonomies created and then the tags assigned to merchants based on that taxonomy. The evaluation revealed a coherence rate exceeding 90% for the chosen taxonomies, while the average coherence for merchant tagging surpassed 80%.

German Text Embedding Clustering Benchmark

This work introduces a benchmark assessing the performance of clustering German text embeddings in different domains. This benchmark is driven by the increasing use of clustering neural text embeddings in tasks that require the grouping of texts (such as topic modeling) and the need for German resources in existing benchmarks. We provide an initial analysis for a range of pre-trained mono- and multilingual models evaluated on the outcome of different clustering algorithms. Results include strong performing mono- and multilingual models. Reducing the dimensions of embeddings can further improve clustering. Additionally, we conduct experiments with continued pre-training for German BERT models to estimate the benefits of this additional training. Our experiments suggest that significant performance improvements are possible for short text. All code and datasets are publicly available.

AHAM: Adapt, Help, Ask, Model -- Harvesting LLMs for literature mining

In an era marked by a rapid increase in scientific publications, researchers grapple with the challenge of keeping pace with field-specific advances. We present the `AHAM' methodology and a metric that guides the domain-specific \textbf{adapt}ation of the BERTopic topic modeling framework to improve scientific text analysis. By utilizing the LLaMa2 generative language model, we generate topic definitions via one-shot learning by crafting prompts with the \textbf{help} of domain experts to guide the LLM for literature mining by \textbf{asking} it to model the topic names. For inter-topic similarity evaluation, we leverage metrics from language generation and translation processes to assess lexical and semantic similarity of the generated topics. Our system aims to reduce both the ratio of outlier topics to the total number of topics and the similarity between topic definitions. The methodology has been assessed on a newly gathered corpus of scientific papers on literature-based discovery. Through rigorous evaluation by domain experts, AHAM has been validated as effective in uncovering intriguing and novel insights within broad research areas. We explore the impact of domain adaptation of sentence-transformers for the task of topic \textbf{model}ing using two datasets, each specialized to specific scientific domains within arXiv and medarxiv. We evaluate the impact of data size, the niche of adaptation, and the importance of domain adaptation. Our results suggest a strong interaction between domain adaptation and topic modeling precision in terms of outliers and topic definitions.

Trinity: Syncretizing Multi-/Long-tail/Long-term Interests All in One

Interest modeling in recommender system has been a constant topic for improving user experience, and typical interest modeling tasks (e.g. multi-interest, long-tail interest and long-term interest) have been investigated in many existing works. However, most of them only consider one interest in isolation, while neglecting their interrelationships. In this paper, we argue that these tasks suffer from a common "interest amnesia" problem, and a solution exists to mitigate it simultaneously. We figure that long-term cues can be the cornerstone since they reveal multi-interest and clarify long-tail interest. Inspired by the observation, we propose a novel and unified framework in the retrieval stage, "Trinity", to solve interest amnesia problem and improve multiple interest modeling tasks. We construct a real-time clustering system that enables us to project items into enumerable clusters, and calculate statistical interest histograms over these clusters. Based on these histograms, Trinity recognizes underdelivered themes and remains stable when facing emerging hot topics. Trinity is more appropriate for large-scale industry scenarios because of its modest computational overheads. Its derived retrievers have been deployed on the recommender system of Douyin, significantly improving user experience and retention. We believe that such practical experience can be well generalized to other scenarios.

KDSTM: Neural Semi-supervised Topic Modeling with Knowledge Distillation

In text classification tasks, fine tuning pretrained language models like BERT and GPT-3 yields competitive accuracy; however, both methods require pretraining on large text datasets. In contrast, general topic modeling methods possess the advantage of analyzing documents to extract meaningful patterns of words without the need of pretraining. To leverage topic modeling's unsupervised insights extraction on text classification tasks, we develop the Knowledge Distillation Semi-supervised Topic Modeling (KDSTM). KDSTM requires no pretrained embeddings, few labeled documents and is efficient to train, making it ideal under resource constrained settings. Across a variety of datasets, our method outperforms existing supervised topic modeling methods in classification accuracy, robustness and efficiency and achieves similar performance compare to state of the art weakly supervised text classification methods.

Exploring the Power of Topic Modeling Techniques in Analyzing Customer Reviews: A Comparative Analysis

The exponential growth of online social network platforms and applications has led to a staggering volume of user-generated textual content, including comments and reviews. Consequently, users often face difficulties in extracting valuable insights or relevant information from such content. To address this challenge, machine learning and natural language processing algorithms have been deployed to analyze the vast amount of textual data available online. In recent years, topic modeling techniques have gained significant popularity in this domain. In this study, we comprehensively examine and compare five frequently used topic modeling methods specifically applied to customer reviews. The methods under investigation are latent semantic analysis (LSA), latent Dirichlet allocation (LDA), non-negative matrix factorization (NMF), pachinko allocation model (PAM), Top2Vec, and BERTopic. By practically demonstrating their benefits in detecting important topics, we aim to highlight their efficacy in real-world scenarios. To evaluate the performance of these topic modeling methods, we carefully select two textual datasets. The evaluation is based on standard statistical evaluation metrics such as topic coherence score. Our findings reveal that BERTopic consistently yield more meaningful extracted topics and achieve favorable results.

S2vNTM: Semi-supervised vMF Neural Topic Modeling

Language model based methods are powerful techniques for text classification. However, the models have several shortcomings. (1) It is difficult to integrate human knowledge such as keywords. (2) It needs a lot of resources to train the models. (3) It relied on large text data to pretrain. In this paper, we propose Semi-Supervised vMF Neural Topic Modeling (S2vNTM) to overcome these difficulties. S2vNTM takes a few seed keywords as input for topics. S2vNTM leverages the pattern of keywords to identify potential topics, as well as optimize the quality of topics' keywords sets. Across a variety of datasets, S2vNTM outperforms existing semi-supervised topic modeling methods in classification accuracy with limited keywords provided. S2vNTM is at least twice as fast as baselines.

MPTopic: Improving topic modeling via Masked Permuted pre-training

Topic modeling is pivotal in discerning hidden semantic structures within texts, thereby generating meaningful descriptive keywords. While innovative techniques like BERTopic and Top2Vec have recently emerged in the forefront, they manifest certain limitations. Our analysis indicates that these methods might not prioritize the refinement of their clustering mechanism, potentially compromising the quality of derived topic clusters. To illustrate, Top2Vec designates the centroids of clustering results to represent topics, whereas BERTopic harnesses C-TF-IDF for its topic extraction.In response to these challenges, we introduce "TF-RDF" (Term Frequency - Relative Document Frequency), a distinctive approach to assess the relevance of terms within a document. Building on the strengths of TF-RDF, we present MPTopic, a clustering algorithm intrinsically driven by the insights of TF-RDF. Through comprehensive evaluation, it is evident that the topic keywords identified with the synergy of MPTopic and TF-RDF outperform those extracted by both BERTopic and Top2Vec.

Comparative Topic Modeling for Determinants of Divergent Report Results Applied to Macular Degeneration Studies

Topic modeling and text mining are subsets of Natural Language Processing with relevance for conducting meta-analysis (MA) and systematic review (SR). For evidence synthesis, the above NLP methods are conventionally used for topic-specific literature searches or extracting values from reports to automate essential phases of SR and MA. Instead, this work proposes a comparative topic modeling approach to analyze reports of contradictory results on the same general research question. Specifically, the objective is to find topics exhibiting distinct associations with significant results for an outcome of interest by ranking them according to their proportional occurrence and consistency of distribution across reports of significant results. The proposed method was tested on broad-scope studies addressing whether supplemental nutritional compounds significantly benefit macular degeneration (MD). Eight compounds were identified as having a particular association with reports of significant results for benefitting MD. Six of these were further supported in terms of effectiveness upon conducting a follow-up literature search for validation (omega-3 fatty acids, copper, zeaxanthin, lutein, zinc, and nitrates). The two not supported by the follow-up literature search (niacin and molybdenum) also had the lowest scores under the proposed methods ranking system, suggesting that the proposed method's score for a given topic is a viable proxy for its degree of association with the outcome of interest. These results underpin the proposed methods potential to add specificity in understanding effects from broad-scope reports, elucidate topics of interest for future research, and guide evidence synthesis in a systematic and scalable way.