Multi-scale fMRI time series analysis for understanding neurodegeneration in MCI

In this study, we present a technique that spans multi-scale views (global scale -- meaning brain network-level and local scale -- examining each individual ROI that constitutes the network) applied to resting-state fMRI volumes. Deep learning based classification is utilized in understanding neurodegeneration. The novelty of the proposed approach lies in utilizing two extreme scales of analysis. One branch considers the entire network within graph-analysis framework. Concurrently, the second branch scrutinizes each ROI within a network independently, focusing on evolution of dynamics. For each subject, graph-based approach employs partial correlation to profile the subject in a single graph where each ROI is a node, providing insights into differences in levels of participation. In contrast, non-linear analysis employs recurrence plots to profile a subject as a multichannel 2D image, revealing distinctions in underlying dynamics. The proposed approach is employed for classification of a cohort of 50 healthy control (HC) and 50 Mild Cognitive Impairment (MCI), sourced from ADNI dataset. Results point to: (1) reduced activity in ROIs such as PCC in MCI (2) greater activity in occipital in MCI, which is not seen in HC (3) when analysed for dynamics, all ROIs in MCI show greater predictability in time-series.

Towards understanding the nature of direct functional connectivity in visual brain network

Recent advances in neuroimaging have enabled studies in functional connectivity (FC) of human brain, alongside investigation of the neuronal basis of cognition. One important FC study is the representation of vision in human brain. The release of publicly available dataset BOLD5000 has made it possible to study the brain dynamics during visual tasks in greater detail. In this paper, a comprehensive analysis of fMRI time series (TS) has been performed to explore different types of visual brain networks (VBN). The novelty of this work lies in (1) constructing VBN with consistently significant direct connectivity using both marginal and partial correlation, which is further analyzed using graph theoretic measures, (2) classification of VBNs as formed by image complexity-specific TS, using graphical features. In image complexity-specific VBN classification, XGBoost yields average accuracy in the range of 86.5% to 91.5% for positively correlated VBN, which is 2% greater than that using negative correlation. This result not only reflects the distinguishing graphical characteristics of each image complexity-specific VBN, but also highlights the importance of studying both positively correlated and negatively correlated VBN to understand the how differently brain functions while viewing different complexities of real-world images.

Large Pre-trained time series models for cross-domain Time series analysis tasks

Large pre-trained models have been instrumental in significant advancements in domains like language and vision making model training for individual downstream tasks more efficient as well as provide superior performance. However, tackling time-series analysis tasks usually involves designing and training a separate model from scratch leveraging training data and domain expertise specific to the task. We tackle a significant challenge for pre-training a general time-series model from multiple heterogeneous time-series dataset: providing semantically useful inputs to models for modeling time series of different dynamics from different domains. We observe that partitioning time-series into segments as inputs to sequential models produces semantically better inputs and propose a novel model LPTM that automatically identifies optimal dataset-specific segmentation strategy leveraging self-supervised learning loss during pre-training. LPTM provides performance similar to or better than domain-specific state-of-art model and is significantly more data and compute efficient taking up to 40% less data as well as 50% less training time to achieve state-of-art performance in a wide range of time-series analysis tasks from multiple disparate domain.

Forecasting Geoffective Events from Solar Wind Data and Evaluating the Most Predictive Features through Machine Learning Approaches

This study addresses the prediction of geomagnetic disturbances by exploiting machine learning techniques. Specifically, the Long-Short Term Memory recurrent neural network, which is particularly suited for application over long time series, is employed in the analysis of in-situ measurements of solar wind plasma and magnetic field acquired over more than one solar cycle, from $2005$ to $2019$, at the Lagrangian point L$1$. The problem is approached as a binary classification aiming to predict one hour in advance a decrease in the SYM-H geomagnetic activity index below the threshold of $-50$ nT, which is generally regarded as indicative of magnetospheric perturbations. The strong class imbalance issue is tackled by using an appropriate loss function tailored to optimize appropriate skill scores in the training phase of the neural network. Beside classical skill scores, value-weighted skill scores are then employed to evaluate predictions, suitable in the study of problems, such as the one faced here, characterized by strong temporal variability. For the first time, the content of magnetic helicity and energy carried by solar transients, associated with their detection and likelihood of geo-effectiveness, were considered as input features of the network architecture. Their predictive capabilities are demonstrated through a correlation-driven feature selection method to rank the most relevant characteristics involved in the neural network prediction model. The optimal performance of the adopted neural network in properly forecasting the onset of geomagnetic storms, which is a crucial point for giving real warnings in an operational setting, is finally showed.

Large Language Models for Time Series: A Survey

Large Language Models (LLMs) have seen significant use in domains such as natural language processing and computer vision. Going beyond text, image and graphics, LLMs present a significant potential for analysis of time series data, benefiting domains such as climate, IoT, healthcare, traffic, audio and finance. This survey paper provides an in-depth exploration and a detailed taxonomy of the various methodologies employed to harness the power of LLMs for time series analysis. We address the inherent challenge of bridging the gap between LLMs' original text data training and the numerical nature of time series data, and explore strategies for transferring and distilling knowledge from LLMs to numerical time series analysis. We detail various methodologies, including (1) direct prompting of LLMs, (2) time series quantization, (3) alignment techniques, (4) utilization of the vision modality as a bridging mechanism, and (5) the combination of LLMs with tools. Additionally, this survey offers a comprehensive overview of the existing multimodal time series and text datasets and delves into the challenges and future opportunities of this emerging field. We maintain an up-to-date Github repository which includes all the papers and datasets discussed in the survey.

IMUOptimize: A Data-Driven Approach to Optimal IMU Placement for Human Pose Estimation with Transformer Architecture

This paper presents a novel approach for predicting human poses using IMU data, diverging from previous studies such as DIP-IMU, IMUPoser, and TransPose, which use up to 6 IMUs in conjunction with bidirectional RNNs. We introduce two main innovations: a data-driven strategy for optimal IMU placement and a transformer-based model architecture for time series analysis. Our findings indicate that our approach not only outperforms traditional 6 IMU-based biRNN models but also that the transformer architecture significantly enhances pose reconstruction from data obtained from 24 IMU locations, with equivalent performance to biRNNs when using only 6 IMUs. The enhanced accuracy provided by our optimally chosen locations, when coupled with the parallelizability and performance of transformers, provides significant improvements to the field of IMU-based pose estimation.

Leveraging Non-Decimated Wavelet Packet Features and Transformer Models for Time Series Forecasting

This article combines wavelet analysis techniques with machine learning methods for univariate time series forecasting, focusing on three main contributions. Firstly, we consider the use of Daubechies wavelets with different numbers of vanishing moments as input features to both non-temporal and temporal forecasting methods, by selecting these numbers during the cross-validation phase. Secondly, we compare the use of both the non-decimated wavelet transform and the non-decimated wavelet packet transform for computing these features, the latter providing a much larger set of potentially useful coefficient vectors. The wavelet coefficients are computed using a shifted version of the typical pyramidal algorithm to ensure no leakage of future information into these inputs. Thirdly, we evaluate the use of these wavelet features on a significantly wider set of forecasting methods than previous studies, including both temporal and non-temporal models, and both statistical and deep learning-based methods. The latter include state-of-the-art transformer-based neural network architectures. Our experiments suggest significant benefit in replacing higher-order lagged features with wavelet features across all examined non-temporal methods for one-step-forward forecasting, and modest benefit when used as inputs for temporal deep learning-based models for long-horizon forecasting.

MOMENT: A Family of Open Time-series Foundation Models

We introduce MOMENT, a family of open-source foundation models for general-purpose time-series analysis. Pre-training large models on time-series data is challenging due to (1) the absence of a large and cohesive public time-series repository, and (2) diverse time-series characteristics which make multi-dataset training onerous. Additionally, (3) experimental benchmarks to evaluate these models, especially in scenarios with limited resources, time, and supervision, are still in their nascent stages. To address these challenges, we compile a large and diverse collection of public time-series, called the Time-series Pile, and systematically tackle time-series-specific challenges to unlock large-scale multi-dataset pre-training. Finally, we build on recent work to design a benchmark to evaluate time-series foundation models on diverse tasks and datasets in limited supervision settings. Experiments on this benchmark demonstrate the effectiveness of our pre-trained models with minimal data and task-specific fine-tuning. Finally, we present several interesting empirical observations about large pre-trained time-series models. Our code is available anonymously at anonymous.4open.science/r/BETT-773F/.