Cross-Task Benchmarking of CNN Architectures

This project provides a comparative study of dynamic convolutional neural networks (CNNs) for various tasks, including image classification, segmentation, and time series analysis. Based on the ResNet-18 architecture, we compare five variants of CNNs: the vanilla CNN, the hard attention-based CNN, the soft attention-based CNN with local (pixel-wise) and global (image-wise) feature attention, and the omni-directional CNN (ODConv). Experiments on Tiny ImageNet, Pascal VOC, and the UCR Time Series Classification Archive illustrate that attention mechanisms and dynamic convolution methods consistently exceed conventional CNNs in accuracy, efficiency, and computational performance. ODConv was especially effective on morphologically complex images by being able to dynamically adjust to varying spatial patterns. Dynamic CNNs enhanced feature representation and cross-task generalization through adaptive kernel modulation. This project provides perspectives on advanced CNN design architecture for multiplexed data modalities and indicates promising directions in neural network engineering.

Augmenting representations with scientific papers

Astronomers have acquired vast repositories of multimodal data, including images, spectra, and time series, complemented by decades of literature that analyzes astrophysical sources. Still, these data sources are rarely systematically integrated. This work introduces a contrastive learning framework designed to align X-ray spectra with domain knowledge extracted from scientific literature, facilitating the development of shared multimodal representations. Establishing this connection is inherently complex, as scientific texts encompass a broader and more diverse physical context than spectra. We propose a contrastive pipeline that achieves a 20% Recall@1% when retrieving texts from spectra, proving that a meaningful alignment between these modalities is not only possible but capable of accelerating the interpretation of rare or poorly understood sources. Furthermore, the resulting shared latent space effectively encodes physically significant information. By fusing spectral and textual data, we improve the estimation of 20 physical variables by 16-18% over unimodal spectral baselines. Our results indicate that a Mixture of Experts (MoE) strategy, which leverages both unimodal and shared representations, yields superior performance. Finally, outlier analysis within the multimodal latent space identifies high-priority targets for follow-up investigation, including a candidate pulsating ULX (PULX) and a gravitational lens system. Importantly, this framework can be extended to other scientific domains where aligning observational data with existing literature is possible.

Time Series Foundation Models as Strong Baselines in Transportation Forecasting: A Large-Scale Benchmark Analysis

Accurate forecasting of transportation dynamics is essential for urban mobility and infrastructure planning. Although recent work has achieved strong performance with deep learning models, these methods typically require dataset-specific training, architecture design and hyper-parameter tuning. This paper evaluates whether general-purpose time-series foundation models can serve as forecasters for transportation tasks by benchmarking the zero-shot performance of the state-of-the-art model, Chronos-2, across ten real-world datasets covering highway traffic volume and flow, urban traffic speed, bike-sharing demand, and electric vehicle charging station data. Under a consistent evaluation protocol, we find that, even without any task-specific fine-tuning, Chronos-2 delivers state-of-the-art or competitive accuracy across most datasets, frequently outperforming classical statistical baselines and specialized deep learning architectures, particularly at longer horizons. Beyond point forecasting, we evaluate its native probabilistic outputs using prediction-interval coverage and sharpness, demonstrating that Chronos-2 also provides useful uncertainty quantification without dataset-specific training. In general, this study supports the adoption of time-series foundation models as a key baseline for transportation forecasting research.

The Chebyshev Polynomial Series Frequency Modulation Model for Waveform Design and Analysis

Polynomial phase signals (PPS) are a staple of waveform design and analysis in sonar, radar, and communications fields. They also find application in the modeling of bioacoustic emissions, especially those of echolocating animals such as bats and odontocetes. This work presents a novel PPS waveform formulation that exploits some special properties of Chebyshev polynomials, such as orthogonality, recurrence relations, and equivalence to trigonometric functions. The result is the Chebyshev Polynomial Frequency Modulation (CPSFM) family of waveforms, which prove useful in the modeling of bioacoustic signals and the approximation of non-polynomial-phase signals such as hyperbolic chirps. We demonstrate that the CPSFM model admits compact analytic expressions for fundamental continuous-time signal processing functions such as the Fourier transform, the convolution and correlation operations, and the ambiguity function. Derivations for these expressions using CPSFM are presented, along with their application to the analysis of biosonar emissions of Mexican free-tailed bats.

Stringology-Based Motif Discovery from EEG Signals: an ADHD Case Study

We propose a novel computational framework for analyzing electroencephalography (EEG) time series using methods from stringology, the study of efficient algorithms for string processing, to systematically identify and characterize recurrent temporal patterns in neural signals. The primary aim is to introduce quantitative measures to understand neural signal dynamics, with the present findings serving as a proof-of-concept. The framework adapts order-preserving matching (OPM) and Cartesian tree matching (CTM) to detect temporal motifs that preserve relative ordering and hierarchical structure while remaining invariant to amplitude scaling. This approach provides a temporally precise representation of EEG dynamics that complements traditional spectral and global complexity analyses. To evaluate its utility, we applied the framework to multichannel EEG recordings from individuals with attention-deficit/hyperactivity disorder (ADHD) and matched controls using a publicly available dataset. Highly recurrent, group-specific motifs were extracted and quantified using both OPM and CTM. The ADHD group exhibited significantly higher motif frequencies, suggesting increased repetitiveness in neural activity. OPM analysis revealed shorter motif lengths and greater gradient instability in ADHD, reflected in larger mean and maximal inter-sample amplitude changes. CTM analysis further demonstrated reduced hierarchical complexity in ADHD, characterized by shallower tree structures and fewer hierarchical levels despite comparable motif lengths. These findings suggest that ADHD-related EEG alterations involve systematic differences in the structure, stability, and hierarchical organization of recurrent temporal patterns. The proposed stringology-based motif framework provides a complementary computational tool with potential applications for objective biomarker development in neurodevelopmental disorders.

FaultXformer: A Transformer-Encoder Based Fault Classification and Location Identification model in PMU-Integrated Active Electrical Distribution System

Accurate fault detection and localization in electrical distribution systems is crucial, especially with the increasing integration of distributed energy resources (DERs), which inject greater variability and complexity into grid operations. In this study, FaultXformer is proposed, a Transformer encoder-based architecture developed for automatic fault analysis using real-time current data obtained from phasor measurement unit (PMU). The approach utilizes time-series current data to initially extract rich temporal information in stage 1, which is crucial for identifying the fault type and precisely determining its location across multiple nodes. In Stage 2, these extracted features are processed to differentiate among distinct fault types and identify the respective fault location within the distribution system. Thus, this dual-stage transformer encoder pipeline enables high-fidelity representation learning, considerably boosting the performance of the work. The model was validated on a dataset generated from the IEEE 13-node test feeder, simulated with 20 separate fault locations and several DER integration scenarios, utilizing current measurements from four strategically located PMUs. To demonstrate robust performance evaluation, stratified 10-fold cross-validation is performed. FaultXformer achieved average accuracies of 98.76% in fault type classification and 98.92% in fault location identification across cross-validation, consistently surpassing conventional deep learning baselines convolutional neural network (CNN), recurrent neural network (RNN). long short-term memory (LSTM) by 1.70%, 34.95%, and 2.04% in classification accuracy and by 10.82%, 40.89%, and 6.27% in location accuracy, respectively. These results demonstrate the efficacy of the proposed model with significant DER penetration.

TokEye: Fast Signal Extraction for Fluctuating Time Series via Offline Self-Supervised Learning From Fusion Diagnostics to Bioacoustics

Next-generation fusion facilities like ITER face a "data deluge," generating petabytes of multi-diagnostic signals daily that challenge manual analysis. We present a "signals-first" self-supervised framework for the automated extraction of coherent and transient modes from high-noise time-frequency data across a variety of sensors. We also develop a general-purpose method and tool for extracting coherent, quasi-coherent, and transient modes for fluctuation measurements in tokamaks by employing non-linear optimal techniques in multichannel signal processing with a fast neural network surrogate on fast magnetics, electron cyclotron emission, CO2 interferometers, and beam emission spectroscopy measurements from DIII-D. Results are tested on data from DIII-D, TJ-II, and non-fusion spectrograms. With an inference latency of 0.5 seconds, this framework enables real-time mode identification and large-scale automated database generation for advanced plasma control. Repository is in https://github.com/PlasmaControl/TokEye.

Functional Continuous Decomposition

The analysis of non-stationary time-series data requires insight into its local and global patterns with physical interpretability. However, traditional smoothing algorithms, such as B-splines, Savitzky-Golay filtering, and Empirical Mode Decomposition (EMD), lack the ability to perform parametric optimization with guaranteed continuity. In this paper, we propose Functional Continuous Decomposition (FCD), a JAX-accelerated framework that performs parametric, continuous optimization on a wide range of mathematical functions. By using Levenberg-Marquardt optimization to achieve up to $C^1$ continuous fitting, FCD transforms raw time-series data into $M$ modes that capture different temporal patterns from short-term to long-term trends. Applications of FCD include physics, medicine, financial analysis, and machine learning, where it is commonly used for the analysis of signal temporal patterns, optimized parameters, derivatives, and integrals of decomposition. Furthermore, FCD can be applied for physical analysis and feature extraction with an average SRMSE of 0.735 per segment and a speed of 0.47s on full decomposition of 1,000 points. Finally, we demonstrate that a Convolutional Neural Network (CNN) enhanced with FCD features, such as optimized function values, parameters, and derivatives, achieved 16.8% faster convergence and 2.5% higher accuracy over a standard CNN.

Physics-based phenomenological characterization of cross-modal bias in multimodal models

The term 'algorithmic fairness' is used to evaluate whether AI models operate fairly in both comparative (where fairness is understood as formal equality, such as "treat like cases as like") and non-comparative (where unfairness arises from the model's inaccuracy, arbitrariness, or inscrutability) contexts. Recent advances in multimodal large language models (MLLMs) are breaking new ground in multimodal understanding, reasoning, and generation; however, we argue that inconspicuous distortions arising from complex multimodal interaction dynamics can lead to systematic bias. The purpose of this position paper is twofold: first, it is intended to acquaint AI researchers with phenomenological explainable approaches that rely on the physical entities that the machine experiences during training/inference, as opposed to the traditional cognitivist symbolic account or metaphysical approaches; second, it is to state that this phenomenological doctrine will be practically useful for tackling algorithmic fairness issues in MLLMs. We develop a surrogate physics-based model that describes transformer dynamics (i.e., semantic network structure and self-/cross-attention) to analyze the dynamics of cross-modal bias in MLLM, which are not fully captured by conventional embedding- or representation-level analyses. We support this position through multi-input diagnostic experiments: 1) perturbation-based analyses of emotion classification using Qwen2.5-Omni and Gemma 3n, and 2) dynamical analysis of Lorenz chaotic time-series prediction through the physical surrogate. Across two architecturally distinct MLLMs, we show that multimodal inputs can reinforce modality dominance rather than mitigate it, as revealed by structured error-attractor patterns under systematic label perturbation, complemented by dynamical analysis.

RhythmBERT: A Self-Supervised Language Model Based on Latent Representations of ECG Waveforms for Heart Disease Detection

Electrocardiogram (ECG) analysis is crucial for diagnosing heart disease, but most self-supervised learning methods treat ECG as a generic time series, overlooking physiologic semantics and rhythm-level structure. Existing contrastive methods utilize augmentations that distort morphology, whereas generative approaches employ fixed-window segmentation, which misaligns cardiac cycles. To address these limitations, we propose RhythmBERT, a generative ECG language model that considers ECG as a language paradigm by encoding P, QRS, and T segments into symbolic tokens via autoencoder-based latent representations. These discrete tokens capture rhythm semantics, while complementary continuous embeddings retain fine-grained morphology, enabling a unified view of waveform structure and rhythm. RhythmBERT is pretrained on approximately 800,000 unlabeled ECG recordings with a masked prediction objective, allowing it to learn contextual representations in a label-efficient manner. Evaluations show that despite using only a single lead, RhythmBERT achieves comparable or superior performance to strong 12-lead baselines. This generalization extends from prevalent conditions such as atrial fibrillation to clinically challenging cases such as subtle ST-T abnormalities and myocardial infarction. Our results suggest that considering ECG as structured language offers a scalable and physiologically aligned pathway for advancing cardiac analysis.