Get our free extension to see links to code for papers anywhere online!

 Add to Chrome

 Add to Firefox

CatalyzeX Code Finder - Browser extension linking code for ML papers across the web! | Product Hunt Embed
BEDS: Bagging ensemble deep segmentation for nucleus segmentation with testing stage stain augmentation

Feb 17, 2021
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo

* 4 pages, 5 figures, ISBI 2021 

  Access Paper or Ask Questions

Towards Annotation-free Instance Segmentation and Tracking with Adversarial Simulations

Jan 19, 2021
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo


  Access Paper or Ask Questions

Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation

Jan 16, 2021
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo


  Access Paper or Ask Questions

WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19

Jan 04, 2021
Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo


  Access Paper or Ask Questions

Multi-Contrast Computed Tomography Healthy Kidney Atlas

Dec 24, 2020
Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman

* 8 pages, 5 figures 

  Access Paper or Ask Questions

RAP-Net: Coarse-to-Fine Multi-Organ Segmentation with Single Random Anatomical Prior

Dec 24, 2020
Ho Hin Lee, Yucheng Tang, Shunxing Bao, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

* 5 pages, 3 figures 

  Access Paper or Ask Questions

Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis

Dec 22, 2020
Ye Chen, Yuankai Huo


  Access Paper or Ask Questions

Fully-Automated Liver Tumor Localization and Characterization from Multi-Phase MR Volumes Using Key-Slice ROI Parsing: A Physician-Inspired Approach

Dec 15, 2020
Bolin Lai, Xiaoyu Bai, Yuhsuan Wu, Xiao-Yun Zhou, Peng Wang, Jinzheng Cai, Yuankai Huo, Lingyun Huang, Yong Xia, Jing Xiao, Le Lu, Heping Hu, Adam Harrison

* 13 pages 

  Access Paper or Ask Questions

Development and Characterization of a Chest CT Atlas

Dec 05, 2020
Kaiwen Xu, Riqiang Gao, Mirza S. Khan, Shunxing Bao, Yucheng Tang, Steve A. Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Mattias P. Heinrich, Bennett A. Landman

* Accepted by SPIE2021 Medical Imaging (oral) 

  Access Paper or Ask Questions

ASIST: Annotation-free synthetic instance segmentation and tracking for microscope video analysis

Nov 02, 2020
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo


  Access Paper or Ask Questions

CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns

Nov 02, 2020
Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo


  Access Paper or Ask Questions

GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects

Oct 22, 2020
Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo


  Access Paper or Ask Questions

Deep Multi-path Network Integrating Incomplete Biomarker and Chest CT Data for Evaluating Lung Cancer Risk

Oct 19, 2020
Riqiang Gao, Yucheng Tang, Kaiwen Xu, Michael N. Kammer, Sanja L. Antic, Steve Deppen, Kim L. Sandler, Pierre P. Massion, Yuankai Huo, Bennett A. Landman

* Accepted by SPIE2021 Medical Imaging, oral 

  Access Paper or Ask Questions

Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization

Aug 07, 2020
Bowen Li, Ke Yan, Dar-In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam P. Harrison

* 10 pages, MICCAI 2020 

  Access Paper or Ask Questions

Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking

Jul 28, 2020
Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J. Tyskac, Yuankai Huo


  Access Paper or Ask Questions

EasierPath: An Open-source Tool for Human-in-the-loop Deep Learning of Renal Pathology

Jul 28, 2020
Zheyu Zhu, Yuzhe Lu, Ruining Deng, Haichun Yang, Agnes B. Fogo, Yuankai Huo


  Access Paper or Ask Questions

Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment

Jul 07, 2020
Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo


  Access Paper or Ask Questions

Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning

Jun 28, 2020
Yuankai Huo, Jinzheng Cai, Chi-Tung Cheng, Ashwin Raju, Ke Yan, Bennett A. Landman, Jing Xiao, Le Lu, Chien-Hung Liao, Adam Harrison


  Access Paper or Ask Questions

Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images

Jun 10, 2020
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes Fogo, Yuankai Huo


  Access Paper or Ask Questions

CircleNet: Anchor-free Detection with Circle Representation

Jun 03, 2020
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo


  Access Paper or Ask Questions

JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans

May 27, 2020
Fengze Liu, Jingzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan Yuille, Le Lu, ChienHung Liao, Adam P Harrison


  Access Paper or Ask Questions

The Value of Nullspace Tuning Using Partial Label Information

Mar 17, 2020
Colin B. Hansen, Vishwesh Nath, Diego A. Mesa, Yuankai Huo, Bennett A. Landman, Thomas A. Lasko


  Access Paper or Ask Questions

Validation and Optimization of Multi-Organ Segmentation on Clinical Imaging Archives

Feb 10, 2020
Yuchen Xu, Olivia Tang, Yucheng Tang, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

* SPIE2020 Medical Imaging 

  Access Paper or Ask Questions

Outlier Guided Optimization of Abdominal Segmentation

Feb 10, 2020
Yuchen Xu, Olivia Tang, Yucheng Tang, Ho Hin Lee, Yunqiang Chen, Dashan Gao, Shizhong Han, Riqiang Gao, Michael R. Savona, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

* SPIE2020 Medical Imaging 

  Access Paper or Ask Questions

Lesion Harvester: Iteratively Mining Unlabeled Lesions and Hard-Negative Examples at Scale

Jan 28, 2020
Jinzheng Cai, Adam P. Harrison, Youjing Zheng, Ke Yan, Yuankai Huo, Jing Xiao, Lin Yang, Le Lu

* This work has been submitted to the IEEE for possible publication 

  Access Paper or Ask Questions

Internal-transfer Weighting of Multi-task Learning for Lung Cancer Detection

Dec 16, 2019
Yiyuan Yang, Riqiang Gao, Yucheng Tang, Sanja L. Antic, Steve Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Bennett A. Landman

* Accepted by Medical Imaging, SPIE2020 

  Access Paper or Ask Questions