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Compound Figure Separation of Biomedical Images with Side Loss


Jul 19, 2021
Tianyuan Yao, Chang Qu, Quan Liu, Ruining Deng, Yuanhan Tian, Jiachen Xu, Aadarsh Jha, Shunxing Bao, Mengyang Zhao, Agnes B. Fogo, Bennett A. Landman, Catie Chang, Haichun Yang, Yuankai Huo


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VoxelEmbed: 3D Instance Segmentation and Tracking with Voxel Embedding based Deep Learning


Jun 22, 2021
Mengyang Zhao, Quan Liu, Aadarsh Jha, Ruining Deng, Tianyuan Yao, Anita Mahadevan-Jansen, Matthew J. Tyska, Bryan A. Millis, Yuankai Huo


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Attention-Guided Supervised Contrastive Learning for Semantic Segmentation


Jun 03, 2021
Ho Hin Lee, Yucheng Tang, Qi Yang, Xin Yu, Shunxing Bao, Bennett A. Landman, Yuankai Huo

* 17 pages, 7 figures 

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SimTriplet: Simple Triplet Representation Learning with a Single GPU


Mar 09, 2021
Quan Liu, Peter C. Louis, Yuzhe Lu, Aadarsh Jha, Mengyang Zhao, Ruining Deng, Tianyuan Yao, Joseph T. Roland, Haichun Yang, Shilin Zhao, Lee E. Wheless, Yuankai Huo


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Contrastive Learning Meets Transfer Learning: A Case Study In Medical Image Analysis


Mar 04, 2021
Yuzhe Lu, Aadarsh Jha, Yuankai Huo


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BEDS: Bagging ensemble deep segmentation for nucleus segmentation with testing stage stain augmentation


Feb 17, 2021
Xing Li, Haichun Yang, Jiaxin He, Aadarsh Jha, Agnes B. Fogo, Lee E. Wheless, Shilin Zhao, Yuankai Huo

* 4 pages, 5 figures, ISBI 2021 

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Towards Annotation-free Instance Segmentation and Tracking with Adversarial Simulations


Jan 19, 2021
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo


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Improve Global Glomerulosclerosis Classification with Imbalanced Data using CircleMix Augmentation


Jan 16, 2021
Yuzhe Lu, Haichun Yang, Zheyu Zhu, Ruining Deng, Agnes B. Fogo, Yuankai Huo


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WearMask: Fast In-browser Face Mask Detection with Serverless Edge Computing for COVID-19


Jan 04, 2021
Zekun Wang, Pengwei Wang, Peter C. Louis, Lee E. Wheless, Yuankai Huo


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Multi-Contrast Computed Tomography Healthy Kidney Atlas


Dec 24, 2020
Ho Hin Lee, Yucheng Tang, Kaiwen Xu, Shunxing Bao, Agnes B. Fogo, Raymond Harris, Mark P. de Caestecker, Mattias Heinrich, Jeffrey M. Spraggins, Yuankai Huo, Bennett A. Landman

* 8 pages, 5 figures 

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RAP-Net: Coarse-to-Fine Multi-Organ Segmentation with Single Random Anatomical Prior


Dec 24, 2020
Ho Hin Lee, Yucheng Tang, Shunxing Bao, Richard G. Abramson, Yuankai Huo, Bennett A. Landman

* 5 pages, 3 figures 

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Limitation of Acyclic Oriented Graphs Matching as Cell Tracking Accuracy Measure when Evaluating Mitosis


Dec 22, 2020
Ye Chen, Yuankai Huo


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Fully-Automated Liver Tumor Localization and Characterization from Multi-Phase MR Volumes Using Key-Slice ROI Parsing: A Physician-Inspired Approach


Dec 15, 2020
Bolin Lai, Xiaoyu Bai, Yuhsuan Wu, Xiao-Yun Zhou, Peng Wang, Jinzheng Cai, Yuankai Huo, Lingyun Huang, Yong Xia, Jing Xiao, Le Lu, Heping Hu, Adam Harrison

* 13 pages 

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Development and Characterization of a Chest CT Atlas


Dec 05, 2020
Kaiwen Xu, Riqiang Gao, Mirza S. Khan, Shunxing Bao, Yucheng Tang, Steve A. Deppen, Yuankai Huo, Kim L. Sandler, Pierre P. Massion, Mattias P. Heinrich, Bennett A. Landman

* Accepted by SPIE2021 Medical Imaging (oral) 

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ASIST: Annotation-free synthetic instance segmentation and tracking for microscope video analysis


Nov 02, 2020
Quan Liu, Isabella M. Gaeta, Mengyang Zhao, Ruining Deng, Aadarsh Jha, Bryan A. Millis, Anita Mahadevan-Jansen, Matthew J. Tyska, Yuankai Huo


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CaCL: Class-aware Codebook Learning for Weakly Supervised Segmentation on Diffuse Image Patterns


Nov 02, 2020
Ruining Deng, Quan Liu, Shunxing Bao, Aadarsh Jha, Catie Chang, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo


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GAN based Unsupervised Segmentation: Should We Match the Exact Number of Objects


Oct 22, 2020
Quan Liu, Isabella M. Gaeta, Bryan A. Millis, Matthew J. Tyska, Yuankai Huo


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Deep Multi-path Network Integrating Incomplete Biomarker and Chest CT Data for Evaluating Lung Cancer Risk


Oct 19, 2020
Riqiang Gao, Yucheng Tang, Kaiwen Xu, Michael N. Kammer, Sanja L. Antic, Steve Deppen, Kim L. Sandler, Pierre P. Massion, Yuankai Huo, Bennett A. Landman

* Accepted by SPIE2021 Medical Imaging, oral 

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Reliable Liver Fibrosis Assessment from Ultrasound using Global Hetero-Image Fusion and View-Specific Parameterization


Aug 07, 2020
Bowen Li, Ke Yan, Dar-In Tai, Yuankai Huo, Le Lu, Jing Xiao, Adam P. Harrison

* 10 pages, MICCAI 2020 

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Faster Mean-shift: GPU-accelerated Embedding-clustering for Cell Segmentation and Tracking


Jul 28, 2020
Mengyang Zhao, Aadarsh Jha, Quan Liu, Bryan A. Millis, Anita Mahadevan-Jansen, Le Lu, Bennett A. Landman, Matthew J. Tyskac, Yuankai Huo


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EasierPath: An Open-source Tool for Human-in-the-loop Deep Learning of Renal Pathology


Jul 28, 2020
Zheyu Zhu, Yuzhe Lu, Ruining Deng, Haichun Yang, Agnes B. Fogo, Yuankai Huo


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Instance Segmentation for Whole Slide Imaging: End-to-End or Detect-Then-Segment


Jul 07, 2020
Aadarsh Jha, Haichun Yang, Ruining Deng, Meghan E. Kapp, Agnes B. Fogo, Yuankai Huo


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Harvesting, Detecting, and Characterizing Liver Lesions from Large-scale Multi-phase CT Data via Deep Dynamic Texture Learning


Jun 28, 2020
Yuankai Huo, Jinzheng Cai, Chi-Tung Cheng, Ashwin Raju, Ke Yan, Bennett A. Landman, Jing Xiao, Le Lu, Chien-Hung Liao, Adam Harrison


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Map3D: Registration Based Multi-Object Tracking on 3D Serial Whole Slide Images


Jun 10, 2020
Ruining Deng, Haichun Yang, Aadarsh Jha, Yuzhe Lu, Peng Chu, Agnes Fogo, Yuankai Huo


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CircleNet: Anchor-free Detection with Circle Representation


Jun 03, 2020
Haichun Yang, Ruining Deng, Yuzhe Lu, Zheyu Zhu, Ye Chen, Joseph T. Roland, Le Lu, Bennett A. Landman, Agnes B. Fogo, Yuankai Huo


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JSSR: A Joint Synthesis, Segmentation, and Registration System for 3D Multi-Modal Image Alignment of Large-scale Pathological CT Scans


May 27, 2020
Fengze Liu, Jingzheng Cai, Yuankai Huo, Chi-Tung Cheng, Ashwin Raju, Dakai Jin, Jing Xiao, Alan Yuille, Le Lu, ChienHung Liao, Adam P Harrison


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The Value of Nullspace Tuning Using Partial Label Information


Mar 17, 2020
Colin B. Hansen, Vishwesh Nath, Diego A. Mesa, Yuankai Huo, Bennett A. Landman, Thomas A. Lasko


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