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Pan-Cancer Integrative Histology-Genomic Analysis via Interpretable Multimodal Deep Learning


Aug 04, 2021
Richard J. Chen, Ming Y. Lu, Drew F. K. Williamson, Tiffany Y. Chen, Jana Lipkova, Muhammad Shaban, Maha Shady, Mane Williams, Bumjin Joo, Zahra Noor, Faisal Mahmood

* Demo: http://pancancer.mahmoodlab.org 

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Whole Slide Images are 2D Point Clouds: Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks


Jul 27, 2021
Richard J. Chen, Ming Y. Lu, Muhammad Shaban, Chengkuan Chen, Tiffany Y. Chen, Drew F. K. Williamson, Faisal Mahmood

* MICCAI 2021 

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A digital score of tumour-associated stroma infiltrating lymphocytes predicts survival in head and neck squamous cell carcinoma


Apr 16, 2021
Muhammad Shaban, Shan E Ahmed Raza, Mariam Hassan, Arif Jamshed, Sajid Mushtaq, Asif Loya, Nikolaos Batis, Jill Brooks, Paul Nankivell, Neil Sharma, Max Robinson, Hisham Mehanna, Syed Ali Khurram, Nasir Rajpoot


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CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images


Sep 03, 2019
Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir Rajpoot

* Accepted in ICCVW 2019 (Visual Recognition for Medical Images) 

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Context-Aware Convolutional Neural Network for Grading of Colorectal Cancer Histology Images


Jul 22, 2019
Muhammad Shaban, Ruqayya Awan, Muhammad Moazam Fraz, Ayesha Azam, David Snead, Nasir M. Rajpoot

* 10 pages, 4 figures, Supplementary Document 

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Methods for Segmentation and Classification of Digital Microscopy Tissue Images


Oct 31, 2018
Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin Kurc, Keyvan Farahani, Tianhao Zhao, Rajarsi Gupta, Jin Tae Kwak, Nasir Rajpoot, Joel Saltz


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Micro-Net: A unified model for segmentation of various objects in microscopy images


Apr 22, 2018
Shan E Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot


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Context-Aware Learning using Transferable Features for Classification of Breast Cancer Histology Images


Mar 06, 2018
Ruqayya Awan, Navid Alemi Koohbanani, Muhammad Shaban, Anna Lisowska, Nasir Rajpoot


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Representation-Aggregation Networks for Segmentation of Multi-Gigapixel Histology Images


Jul 27, 2017
Abhinav Agarwalla, Muhammad Shaban, Nasir M. Rajpoot

* Published in Workshop on Deep Learning in Irregular Domains (DLID) in BMVC2017 

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