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Algorithm Fairness in AI for Medicine and Healthcare


Oct 01, 2021
Richard J. Chen, Tiffany Y. Chen, Jana Lipkova, Judy J. Wang, Drew F. K. Williamson, Ming Y. Lu, Sharifa Sahai, Faisal Mahmood


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Pan-Cancer Integrative Histology-Genomic Analysis via Interpretable Multimodal Deep Learning


Aug 04, 2021
Richard J. Chen, Ming Y. Lu, Drew F. K. Williamson, Tiffany Y. Chen, Jana Lipkova, Muhammad Shaban, Maha Shady, Mane Williams, Bumjin Joo, Zahra Noor, Faisal Mahmood

* Demo: http://pancancer.mahmoodlab.org 

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Fast and Scalable Image Search For Histology


Jul 28, 2021
Chengkuan Chen, Ming Y. Lu, Drew F. K. Williamson, Tiffany Y. Chen, Andrew J. Schaumberg, Faisal Mahmood


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Deep Learning-based Frozen Section to FFPE Translation


Jul 27, 2021
Kutsev Bengisu Ozyoruk, Sermet Can, Guliz Irem Gokceler, Kayhan Basak, Derya Demir, Gurdeniz Serin, Uguray Payam Hacisalihoglu, Berkan Darbaz, Ming Y. Lu, Tiffany Y. Chen, Drew F. K. Williamson, Funda Yilmaz, Faisal Mahmood, Mehmet Turan


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Whole Slide Images are 2D Point Clouds: Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks


Jul 27, 2021
Richard J. Chen, Ming Y. Lu, Muhammad Shaban, Chengkuan Chen, Tiffany Y. Chen, Drew F. K. Williamson, Faisal Mahmood

* MICCAI 2021 

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Federated Learning for Computational Pathology on Gigapixel Whole Slide Images


Sep 23, 2020
Ming Y. Lu, Dehan Kong, Jana Lipkova, Richard J. Chen, Rajendra Singh, Drew F. K. Williamson, Tiffany Y. Chen, Faisal Mahmood


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VR-Caps: A Virtual Environment for Capsule Endoscopy


Aug 29, 2020
Kagan Incetan, Ibrahim Omer Celik, Abdulhamid Obeid, Guliz Irem Gokceler, Kutsev Bengisu Ozyoruk, Yasin Almalioglu, Richard J. Chen, Faisal Mahmood, Hunter Gilbert, Nicholas J. Durr, Mehmet Turan

* 18 pages, 13 figures 

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Quantitative Evaluation of Endoscopic SLAM Methods: EndoSLAM Dataset


Jul 01, 2020
Kutsev Bengisu Ozyoruk, Kagan Incetan, Gulfize Coskun, Guliz Irem Gokceler, Yasin Almalioglu, Faisal Mahmood, Nicholas J. Durr, Eva Curto, Luis Perdigoto, Marina Oliveira, Helder Araujo, Henrique Alexandrino, Hunter B. Gilbert, Mehmet Turan

* 27 pages, 16 figures 

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Deep Learning-based Computational Pathology Predicts Origins for Cancers of Unknown Primary


Jun 29, 2020
Ming Y. Lu, Melissa Zhao, Maha Shady, Jana Lipkova, Tiffany Y. Chen, Drew F. K. Williamson, Faisal Mahmood


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Data Efficient and Weakly Supervised Computational Pathology on Whole Slide Images


May 22, 2020
Ming Y. Lu, Drew F. K. Williamson, Tiffany Y. Chen, Richard J. Chen, Matteo Barbieri, Faisal Mahmood


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EndoL2H: Deep Super-Resolution for Capsule Endoscopy


Feb 13, 2020
Yasin Almalioglu, Abdulkadir Gokce, Kagan Incetan, Muhammed Ali Simsek, Kivanc Ararat, Richard J. Chen, Nichalos J. Durr, Faisal Mahmood, Mehmet Turan

* 15 pages, submitted to IEEE Transactions on Medical Imaging, corresponding Author: Mehmet Turan 

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Pathomic Fusion: An Integrated Framework for Fusing Histopathology and Genomic Features for Cancer Diagnosis and Prognosis


Dec 30, 2019
Richard J. Chen, Ming Y. Lu, Jingwen Wang, Drew F. K. Williamson, Scott J. Rodig, Neal I. Lindeman, Faisal Mahmood

* Code and trained models are made available at: https://github.com/mahmoodlab/PathomicFusion 

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Weakly Supervised Prostate TMA Classification via Graph Convolutional Networks


Nov 06, 2019
Jingwen Wang, Richard J. Chen, Ming Y. Lu, Alexander Baras, Faisal Mahmood


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Semi-Supervised Histology Classification using Deep Multiple Instance Learning and Contrastive Predictive Coding


Nov 02, 2019
Ming Y. Lu, Richard J. Chen, Jingwen Wang, Debora Dillon, Faisal Mahmood


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SLAM Endoscopy enhanced by adversarial depth prediction


Jun 29, 2019
Richard J. Chen, Taylor L. Bobrow, Thomas Athey, Faisal Mahmood, Nicholas J. Durr


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GANPOP: Generative Adversarial Network Prediction of Optical Properties from Single Snapshot Wide-field Images


Jun 20, 2019
Mason T. Chen, Faisal Mahmood, Jordan A. Sweer, Nicholas J. Durr


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Structured Prediction using cGANs with Fusion Discriminator


Apr 30, 2019
Faisal Mahmood, Wenhao Xu, Nicholas J. Durr, Jeremiah W. Johnson, Alan Yuille

* Workshop on Deep Generative Models for Structured Prediction at ICLR 2019 
* 13 pages, 5 figures, 3 tables 

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Multimodal Densenet


Nov 18, 2018
Faisal Mahmood, Ziyun Yang, Thomas Ashley, Nicholas J. Durr

* 10 pages, 6 figures 

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DeepLSR: Deep learning approach for laser speckle reduction


Oct 23, 2018
Taylor L. Bobrow, Faisal Mahmood, Miguel Inserni, Nicholas J. Durr


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Deep Adversarial Training for Multi-Organ Nuclei Segmentation in Histopathology Images


Oct 19, 2018
Faisal Mahmood, Daniel Borders, Richard Chen, Gregory N. McKay, Kevan J. Salimian, Alexander Baras, Nicholas J. Durr


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Deep Learning with Cinematic Rendering: Fine-Tuning Deep Neural Networks Using Photorealistic Medical Images


Sep 29, 2018
Faisal Mahmood, Richard Chen, Sandra Sudarsky, Daphne Yu, Nicholas J. Durr

* 14 Pages, 4 Figures, 3 Tables, Physics in Medicine and Biology (2018) 

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Rethinking Monocular Depth Estimation with Adversarial Training


Sep 24, 2018
Richard Chen, Faisal Mahmood, Alan Yuille, Nicholas J. Durr


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Adaptive Graph-based Total Variation for Tomographic Reconstructions


Mar 14, 2018
Faisal Mahmood, Nauman Shahid, Ulf Skoglund, Pierre Vandergheynst

* 8 Pages, 5 page letter, 3 page supplement, 8 Figures, Accepted for publication: IEEE Signal Processing Letters 

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