BioMedLM: A 2.7B Parameter Language Model Trained On Biomedical Text

Models such as GPT-4 and Med-PaLM 2 have demonstrated impressive performance on a wide variety of biomedical NLP tasks. However, these models have hundreds of billions of parameters, are computationally expensive to run, require users to send their input data over the internet, and are trained on unknown data sources. Can smaller, more targeted models compete? To address this question, we build and release BioMedLM, a 2.7 billion parameter GPT-style autoregressive model trained exclusively on PubMed abstracts and full articles. When fine-tuned, BioMedLM can produce strong multiple-choice biomedical question-answering results competitive with much larger models, such as achieving a score of 57.3% on MedMCQA (dev) and 69.0% on the MMLU Medical Genetics exam. BioMedLM can also be fine-tuned to produce useful answers to patient questions on medical topics. This demonstrates that smaller models can potentially serve as transparent, privacy-preserving, economical and environmentally friendly foundations for particular NLP applications, such as in biomedicine. The model is available on the Hugging Face Hub: https://huggingface.co/stanford-crfm/BioMedLM.

MosaicBERT: A Bidirectional Encoder Optimized for Fast Pretraining

Although BERT-style encoder models are heavily used in NLP research, many researchers do not pretrain their own BERTs from scratch due to the high cost of training. In the past half-decade since BERT first rose to prominence, many advances have been made with other transformer architectures and training configurations that have yet to be systematically incorporated into BERT. Here, we introduce MosaicBERT, a BERT-style encoder architecture and training recipe that is empirically optimized for fast pretraining. This efficient architecture incorporates FlashAttention, Attention with Linear Biases (ALiBi), Gated Linear Units (GLU), a module to dynamically remove padded tokens, and low precision LayerNorm into the classic transformer encoder block. The training recipe includes a 30% masking ratio for the Masked Language Modeling (MLM) objective, bfloat16 precision, and vocabulary size optimized for GPU throughput, in addition to best-practices from RoBERTa and other encoder models. When pretrained from scratch on the C4 dataset, this base model achieves a downstream average GLUE (dev) score of 79.6 in 1.13 hours on 8 A100 80 GB GPUs at a cost of roughly $20. We plot extensive accuracy vs. pretraining speed Pareto curves and show that MosaicBERT base and large are consistently Pareto optimal when compared to a competitive BERT base and large. This empirical speed up in pretraining enables researchers and engineers to pretrain custom BERT-style models at low cost instead of finetune on existing generic models. We open source our model weights and code.

Dataset Difficulty and the Role of Inductive Bias

Motivated by the goals of dataset pruning and defect identification, a growing body of methods have been developed to score individual examples within a dataset. These methods, which we call "example difficulty scores", are typically used to rank or categorize examples, but the consistency of rankings between different training runs, scoring methods, and model architectures is generally unknown. To determine how example rankings vary due to these random and controlled effects, we systematically compare different formulations of scores over a range of runs and model architectures. We find that scores largely share the following traits: they are noisy over individual runs of a model, strongly correlated with a single notion of difficulty, and reveal examples that range from being highly sensitive to insensitive to the inductive biases of certain model architectures. Drawing from statistical genetics, we develop a simple method for fingerprinting model architectures using a few sensitive examples. These findings guide practitioners in maximizing the consistency of their scores (e.g. by choosing appropriate scoring methods, number of runs, and subsets of examples), and establishes comprehensive baselines for evaluating scores in the future.

Beyond Chinchilla-Optimal: Accounting for Inference in Language Model Scaling Laws

Large language model (LLM) scaling laws are empirical formulas that estimate changes in model quality as a result of increasing parameter count and training data. However, these formulas, including the popular DeepMind Chinchilla scaling laws, neglect to include the cost of inference. We modify the Chinchilla scaling laws to calculate the optimal LLM parameter count and pre-training data size to train and deploy a model of a given quality and inference demand. We conduct our analysis both in terms of a compute budget and real-world costs and find that LLM researchers expecting reasonably large inference demand (~1B requests) should train models smaller and longer than Chinchilla-optimal.

CommonCanvas: An Open Diffusion Model Trained with Creative-Commons Images

We assemble a dataset of Creative-Commons-licensed (CC) images, which we use to train a set of open diffusion models that are qualitatively competitive with Stable Diffusion 2 (SD2). This task presents two challenges: (1) high-resolution CC images lack the captions necessary to train text-to-image generative models; (2) CC images are relatively scarce. In turn, to address these challenges, we use an intuitive transfer learning technique to produce a set of high-quality synthetic captions paired with curated CC images. We then develop a data- and compute-efficient training recipe that requires as little as 3% of the LAION-2B data needed to train existing SD2 models, but obtains comparable quality. These results indicate that we have a sufficient number of CC images (~70 million) for training high-quality models. Our training recipe also implements a variety of optimizations that achieve ~3X training speed-ups, enabling rapid model iteration. We leverage this recipe to train several high-quality text-to-image models, which we dub the CommonCanvas family. Our largest model achieves comparable performance to SD2 on a human evaluation, despite being trained on our CC dataset that is significantly smaller than LAION and using synthetic captions for training. We release our models, data, and code at https://github.com/mosaicml/diffusion/blob/main/assets/common-canvas.md

Dynamic Masking Rate Schedules for MLM Pretraining

Most works on transformers trained with the Masked Language Modeling (MLM) objective use the original BERT model's fixed masking rate of 15%. Our work instead dynamically schedules the masking ratio throughout training. We found that linearly decreasing the masking rate from 30% to 15% over the course of pretraining improves average GLUE accuracy by 0.46% in BERT-base, compared to a standard 15% fixed rate. Further analyses demonstrate that the gains from scheduling come from being exposed to both high and low masking rate regimes. Our results demonstrate that masking rate scheduling is a simple way to improve the quality of masked language models and achieve up to a 1.89x speedup in pretraining.

Knowledge Distillation for Efficient Sequences of Training Runs

In many practical scenarios -- like hyperparameter search or continual retraining with new data -- related training runs are performed many times in sequence. Current practice is to train each of these models independently from scratch. We study the problem of exploiting the computation invested in previous runs to reduce the cost of future runs using knowledge distillation (KD). We find that augmenting future runs with KD from previous runs dramatically reduces the time necessary to train these models, even taking into account the overhead of KD. We improve on these results with two strategies that reduce the overhead of KD by 80-90% with minimal effect on accuracy and vast pareto-improvements in overall cost. We conclude that KD is a promising avenue for reducing the cost of the expensive preparatory work that precedes training final models in practice.

The Effect of Data Dimensionality on Neural Network Prunability

Practitioners prune neural networks for efficiency gains and generalization improvements, but few scrutinize the factors determining the prunability of a neural network the maximum fraction of weights that pruning can remove without compromising the model's test accuracy. In this work, we study the properties of input data that may contribute to the prunability of a neural network. For high dimensional input data such as images, text, and audio, the manifold hypothesis suggests that these high dimensional inputs approximately lie on or near a significantly lower dimensional manifold. Prior work demonstrates that the underlying low dimensional structure of the input data may affect the sample efficiency of learning. In this paper, we investigate whether the low dimensional structure of the input data affects the prunability of a neural network.

Reduce, Reuse, Recycle: Improving Training Efficiency with Distillation

Methods for improving the efficiency of deep network training (i.e. the resources required to achieve a given level of model quality) are of immediate benefit to deep learning practitioners. Distillation is typically used to compress models or improve model quality, but it's unclear if distillation actually improves training efficiency. Can the quality improvements of distillation be converted into training speed-ups, or do they simply increase final model quality with no resource savings? We conducted a series of experiments to investigate whether and how distillation can be used to accelerate training using ResNet-50 trained on ImageNet and BERT trained on C4 with a masked language modeling objective and evaluated on GLUE, using common enterprise hardware (8x NVIDIA A100). We found that distillation can speed up training by up to 1.96x in ResNet-50 trained on ImageNet and up to 1.42x on BERT when evaluated on GLUE. Furthermore, distillation for BERT yields optimal results when it is only performed for the first 20-50% of training. We also observed that training with distillation is almost always more efficient than training without distillation, even when using the poorest-quality model as a teacher, in both ResNet-50 and BERT. Finally, we found that it's possible to gain the benefit of distilling from an ensemble of teacher models, which has O(n) runtime cost, by randomly sampling a single teacher from the pool of teacher models on each step, which only has a O(1) runtime cost. Taken together, these results show that distillation can substantially improve training efficiency in both image classification and language modeling, and that a few simple optimizations to distillation protocols can further enhance these efficiency improvements.