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Jeff W. Lichtman

Department of Molecular and Cellular Biology, Harvard University, Cambridge, MA, Center for Brain Science, Harvard University, Cambridge, MA

Learning Guided Electron Microscopy with Active Acquisition


Jan 07, 2021
Lu Mi, Hao Wang, Yaron Meirovitch, Richard Schalek, Srinivas C. Turaga, Jeff W. Lichtman, Aravinthan D. T. Samuel, Nir Shavit

* MICCAI 2020 

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A Topological Nomenclature for 3D Shape Analysis in Connectomics


Sep 27, 2019
Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Dong Jang, Xueying Wang, Jeff W. Lichtman, Hanspeter Pfister

* Technical report 

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Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets


Oct 25, 2018
Toufiq Parag, Daniel Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister


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Anisotropic EM Segmentation by 3D Affinity Learning and Agglomeration


Aug 03, 2018
Toufiq Parag, Fabian Tschopp, William Grisaitis, Srinivas C Turaga, Xuewen Zhang, Brian Matejek, Lee Kamentsky, Jeff W. Lichtman, Hanspeter Pfister


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Morphological Error Detection in 3D Segmentations


May 30, 2017
David Rolnick, Yaron Meirovitch, Toufiq Parag, Hanspeter Pfister, Viren Jain, Jeff W. Lichtman, Edward S. Boyden, Nir Shavit

* 13 pages, 6 figures 

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Guided Proofreading of Automatic Segmentations for Connectomics


Apr 04, 2017
Daniel Haehn, Verena Kaynig, James Tompkin, Jeff W. Lichtman, Hanspeter Pfister

* Supplemental material available at http://rhoana.org/guidedproofreading/supplemental.pdf 

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Registering large volume serial-section electron microscopy image sets for neural circuit reconstruction using FFT signal whitening


Dec 14, 2016
Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich, David G. C. Hildebrand, Josh L. Morgan, Jeff W. Lichtman

* 10 pages, 4 figures as submitted for the 2016 IEEE Applied Imagery and Pattern Recognition Workshop proceedings, Oct 18-20, 2016 

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RhoanaNet Pipeline: Dense Automatic Neural Annotation


Nov 21, 2016
Seymour Knowles-Barley, Verena Kaynig, Thouis Ray Jones, Alyssa Wilson, Joshua Morgan, Dongil Lee, Daniel Berger, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister

* 13 pages, 4 figures 

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Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes using High-Resolution Neural EM Data


Apr 16, 2014
Ayushi Sinha, William Gray Roncal, Narayanan Kasthuri, Jeff W. Lichtman, Randal Burns, Michael Kazhdan

* 2 pages, 1 figure; The 3rd Annual Hopkins Imaging Conference, The Johns Hopkins University, Baltimore, MD 

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Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes


Apr 16, 2014
Ayushi Sinha, William Gray Roncal, Narayanan Kasthuri, Ming Chuang, Priya Manavalan, Dean M. Kleissas, Joshua T. Vogelstein, R. Jacob Vogelstein, Randal Burns, Jeff W. Lichtman, Michael Kazhdan

* 2 pages, 1 figure 

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