OmniGenBench: A Modular Platform for Reproducible Genomic Foundation Models Benchmarking

The code of nature, embedded in DNA and RNA genomes since the origin of life, holds immense potential to impact both humans and ecosystems through genome modeling. Genomic Foundation Models (GFMs) have emerged as a transformative approach to decoding the genome. As GFMs scale up and reshape the landscape of AI-driven genomics, the field faces an urgent need for rigorous and reproducible evaluation. We present OmniGenBench, a modular benchmarking platform designed to unify the data, model, benchmarking, and interpretability layers across GFMs. OmniGenBench enables standardized, one-command evaluation of any GFM across five benchmark suites, with seamless integration of over 31 open-source models. Through automated pipelines and community-extensible features, the platform addresses critical reproducibility challenges, including data transparency, model interoperability, benchmark fragmentation, and black-box interpretability. OmniGenBench aims to serve as foundational infrastructure for reproducible genomic AI research, accelerating trustworthy discovery and collaborative innovation in the era of genome-scale modeling.

Efficient Federated Class-Incremental Learning of Pre-Trained Models via Task-agnostic Low-rank Residual Adaptation

Federated Parameter-Efficient Fine-Tuning (FedPEFT) reduces communication and computation costs in federated fine-tuning of pre-trained models by updating only a small subset of model parameters. However, existing approaches assume static data distributions, failing to adequately address real-world scenarios where new classes continually emerge, particularly in Federated Class Incremental Learning (FCIL). FCIL faces two key challenges: catastrophic forgetting and performance degradation caused by non-IID data across clients. Unlike current methods that maintain separate task-specific components or suffer from aggregation noise during parameter aggregation, we propose Federated Task-agnostic Low-rank Residual Adaptation (Fed-TaLoRA), a novel parameter-efficient approach for fine-tuning in resource-constrained FCIL scenarios. Specifically, we fine-tune only shared task-agnostic LoRA parameters across sequential tasks, effectively mitigating catastrophic forgetting while enabling efficient knowledge transfer among clients. Based on a theoretical analysis of aggregation, we develop a novel residual weight update mechanism that ensures accurate knowledge consolidation with minimal overhead. Our methodological innovations are attributed to three key strategies: task-agnostic adaptation, post-aggregation model calibration, and strategic placement of LoRA modules. Extensive experiments on multiple benchmark datasets demonstrate that Fed-TaLoRA consistently outperforms state-of-the-art methods in diverse data heterogeneity scenarios while substantially reducing resource requirements.

Memory-Efficient Orthogonal Fine-Tuning with Principal Subspace Adaptation

Driven by the relentless growth in model parameters, which renders full fine-tuning prohibitively expensive for large-scale deployment, parameter-efficient fine-tuning (PEFT) has emerged as a crucial approach for rapidly adapting large models to a wide range of downstream tasks. Among the PEFT family, orthogonal fine-tuning and its variants have demonstrated remarkable performance by preserving hyperspherical energy, which encodes pairwise angular similarity between neurons. However, these methods are inherently memory-inefficient due to the need to store intermediate activations from multiple full-dimensional sparse matrices. To address this limitation, we propose Memory-efficient Orthogonal Fine-Tuning (MOFT) with principal subspace adaptation. Specifically, we first establish a theoretical condition under which orthogonal transformations within a low-rank subspace preserve hyperspherical energy. Based on this insight, we constrain orthogonal fine-tuning to the principal subspace defined by the top-r components obtained through singular value decomposition and impose an additional constraint on the projection matrix to satisfy the preservation condition. To enhance MOFT's flexibility across tasks, we relax strict orthogonality by introducing two learnable scaling vectors. Extensive experiments on 37 diverse tasks and four models across NLP and CV demonstrate that MOFT consistently outperforms key baselines while significantly reducing the memory footprint of orthogonal fine-tuning.

Towards Robust Spiking Neural Networks:Mitigating Heterogeneous Training Vulnerability via Dominant Eigencomponent Projection

Spiking Neural Networks (SNNs) process information via discrete spikes, enabling them to operate at remarkably low energy levels. However, our experimental observations reveal a striking vulnerability when SNNs are trained using the mainstream method--direct encoding combined with backpropagation through time (BPTT): even a single backward pass on data drawn from a slightly different distribution can lead to catastrophic network collapse. Our theoretical analysis attributes this vulnerability to the repeated inputs inherent in direct encoding and the gradient accumulation characteristic of BPTT, which together produce an exceptional large Hessian spectral radius. To address this challenge, we develop a hyperparameter-free method called Dominant Eigencomponent Projection (DEP). By orthogonally projecting gradients to precisely remove their dominant components, DEP effectively reduces the Hessian spectral radius, thereby preventing SNNs from settling into sharp minima. Extensive experiments demonstrate that DEP not only mitigates the vulnerability of SNNs to heterogeneous data poisoning, but also significantly enhances overall robustness compared to key baselines, providing strong support for safer and more reliable SNN deployment.

Dynamic Pricing for On-Demand DNN Inference in the Edge-AI Market

The convergence of edge computing and AI gives rise to Edge-AI, which enables the deployment of real-time AI applications and services at the network edge. One of the fundamental research issues in Edge-AI is edge inference acceleration, which aims to realize low-latency high-accuracy DNN inference services by leveraging the fine-grained offloading of partitioned inference tasks from end devices to edge servers. However, existing research has yet to adopt a practical Edge-AI market perspective, which would systematically explore the personalized inference needs of AI users (e.g., inference accuracy, latency, and task complexity), the revenue incentives for AI service providers that offer edge inference services, and multi-stakeholder governance within a market-oriented context. To bridge this gap, we propose an Auction-based Edge Inference Pricing Mechanism (AERIA) for revenue maximization to tackle the multi-dimensional optimization problem of DNN model partition, edge inference pricing, and resource allocation. We investigate the multi-exit device-edge synergistic inference scheme for on-demand DNN inference acceleration, and analyse the auction dynamics amongst the AI service providers, AI users and edge infrastructure provider. Owing to the strategic mechanism design via randomized consensus estimate and cost sharing techniques, the Edge-AI market attains several desirable properties, including competitiveness in revenue maximization, incentive compatibility, and envy-freeness, which are crucial to maintain the effectiveness, truthfulness, and fairness of our auction outcomes. The extensive simulation experiments based on four representative DNN inference workloads demonstrate that our AERIA mechanism significantly outperforms several state-of-the-art approaches in revenue maximization, demonstrating the efficacy of AERIA for on-demand DNN inference in the Edge-AI market.

Incentivizing Multi-Tenant Split Federated Learning for Foundation Models at the Network Edge

Foundation models (FMs) such as GPT-4 exhibit exceptional generative capabilities across diverse downstream tasks through fine-tuning. Split Federated Learning (SFL) facilitates privacy-preserving FM fine-tuning on resource-constrained local devices by offloading partial FM computations to edge servers, enabling device-edge synergistic fine-tuning. Practical edge networks often host multiple SFL tenants to support diversified downstream tasks. However, existing research primarily focuses on single-tenant SFL scenarios, and lacks tailored incentive mechanisms for multi-tenant settings, which are essential to effectively coordinate self-interested local devices for participation in various downstream tasks, ensuring that each SFL tenant's distinct FM fine-tuning requirements (e.g., FM types, performance targets, and fine-tuning deadlines) are met. To address this gap, we propose a novel Price-Incentive Mechanism (PRINCE) that guides multiple SFL tenants to offer strategic price incentives, which solicit high-quality device participation for efficient FM fine-tuning. Specifically, we first develop a bias-resilient global SFL model aggregation scheme to eliminate model biases caused by independent device participation. We then derive a rigorous SFL convergence bound to evaluate the contributions of heterogeneous devices to FM performance improvements, guiding the incentive strategies of SFL tenants. Furthermore, we model inter-tenant device competition as a congestion game for Stackelberg equilibrium (SE) analysis, deriving each SFL tenant's optimal incentive strategy. Extensive simulations involving four representative SFL tenant types (ViT, BERT, Whisper, and LLaMA) across diverse data modalities (text, images, and audio) demonstrate that PRINCE accelerates FM fine-tuning by up to 3.07x compared to state-of-the-art approaches, while consistently meeting fine-tuning performance targets.

Adaptive Rank Allocation for Federated Parameter-Efficient Fine-Tuning of Language Models

Pre-trained Language Models (PLMs) have demonstrated their superiority and versatility in modern Natural Language Processing (NLP), effectively adapting to various downstream tasks through further fine-tuning. Federated Parameter-Efficient Fine-Tuning (FedPEFT) has emerged as a promising solution to address privacy and efficiency challenges in distributed training for PLMs on mobile devices. However, our measurements reveal two key limitations of FedPEFT: heterogeneous data leads to significant performance degradation, and a fixed parameter configuration results in communication inefficiency. To overcome these limitations, we propose FedARA, a novel Federated Adaptive Rank Allocation for parameter-efficient fine-tuning of language models. Specifically, FedARA employs truncated singular value decomposition (SVD) adaptation to enhance flexibility and expressiveness, significantly mitigating the adverse effects of data heterogeneity. Subsequently, it utilizes dynamic rank allocation to progressively identify critical ranks, effectively improving communication efficiency. Lastly, it leverages rank-based module pruning to remove inactive modules, steadily reducing local training time and peak memory usage in each round. Extensive experiments show that FedARA consistently outperforms weak baselines by an average of 8.49\% and strong baselines by 6.95\% across various datasets under data heterogeneity while significantly improving communication efficiency by 2.40\(\times\). Moreover, experiments on AGX Orin, Orin Nano and Raspberry Pi 5 devices demonstrate substantial decreases in total training time and energy consumption by up to 48.90\% and 46.95\%, respectively.

Federated Continual Learning for Edge-AI: A Comprehensive Survey

Edge-AI, the convergence of edge computing and artificial intelligence (AI), has become a promising paradigm that enables the deployment of advanced AI models at the network edge, close to users. In Edge-AI, federated continual learning (FCL) has emerged as an imperative framework, which fuses knowledge from different clients while preserving data privacy and retaining knowledge from previous tasks as it learns new ones. By so doing, FCL aims to ensure stable and reliable performance of learning models in dynamic and distributed environments. In this survey, we thoroughly review the state-of-the-art research and present the first comprehensive survey of FCL for Edge-AI. We categorize FCL methods based on three task characteristics: federated class continual learning, federated domain continual learning, and federated task continual learning. For each category, an in-depth investigation and review of the representative methods are provided, covering background, challenges, problem formalisation, solutions, and limitations. Besides, existing real-world applications empowered by FCL are reviewed, indicating the current progress and potential of FCL in diverse application domains. Furthermore, we discuss and highlight several prospective research directions of FCL such as algorithm-hardware co-design for FCL and FCL with foundation models, which could provide insights into the future development and practical deployment of FCL in the era of Edge-AI.

Model Partition and Resource Allocation for Split Learning in Vehicular Edge Networks

The integration of autonomous driving technologies with vehicular networks presents significant challenges in privacy preservation, communication efficiency, and resource allocation. This paper proposes a novel U-shaped split federated learning (U-SFL) framework to address these challenges on the way of realizing in vehicular edge networks. U-SFL is able to enhance privacy protection by keeping both raw data and labels on the vehicular user (VU) side while enabling parallel processing across multiple vehicles. To optimize communication efficiency, we introduce a semantic-aware auto-encoder (SAE) that significantly reduces the dimensionality of transmitted data while preserving essential semantic information. Furthermore, we develop a deep reinforcement learning (DRL) based algorithm to solve the NP-hard problem of dynamic resource allocation and split point selection. Our comprehensive evaluation demonstrates that U-SFL achieves comparable classification performance to traditional split learning (SL) while substantially reducing data transmission volume and communication latency. The proposed DRL-based optimization algorithm shows good convergence in balancing latency, energy consumption, and learning performance.

TrajWeaver: Trajectory Recovery with State Propagation Diffusion Model

With the proliferation of location-aware devices, large amount of trajectories have been generated when agents such as people, vehicles and goods flow around the urban environment. These raw trajectories, typically collected from various sources such as GPS in cars, personal mobile devices, and public transport, are often sparse and fragmented due to limited sampling rates, infrastructure coverage and data loss. In this context, trajectory recovery aims to reconstruct such sparse raw trajectories into their dense and continuous counterparts, so that fine-grained movement of agents across space and time can be captured faithfully. Existing trajectory recovery approaches typically rely on the prior knowledge of travel mode or motion patterns, and often fail in densely populated urban areas where accurate maps are absent. In this paper, we present a new recovery framework called TrajWeaver based on probabilistic diffusion models, which is able to recover dense and refined trajectories from the sparse raw ones, conditioned on various auxiliary features such as Areas of Interest along the way, user identity and waybill information. The core of TrajWeaver is a novel State Propagation Diffusion Model (SPDM), which introduces a new state propagation mechanism on top of the standard diffusion models, so that knowledge computed in earlier diffusion steps can be reused later, improving the recovery performance while reducing the number of steps needed. Extensive experiments show that the proposed TrajWeaver can recover from raw trajectories of various lengths, sparsity levels and heterogeneous travel modes, and outperform the state-of-the-art baselines significantly in recovery accuracy. Our code is available at: https://anonymous.4open.science/r/TrajWeaver/