CholecTriplet2022: Show me a tool and tell me the triplet -- an endoscopic vision challenge for surgical action triplet detection

Formalizing surgical activities as triplets of the used instruments, actions performed, and target anatomies is becoming a gold standard approach for surgical activity modeling. The benefit is that this formalization helps to obtain a more detailed understanding of tool-tissue interaction which can be used to develop better Artificial Intelligence assistance for image-guided surgery. Earlier efforts and the CholecTriplet challenge introduced in 2021 have put together techniques aimed at recognizing these triplets from surgical footage. Estimating also the spatial locations of the triplets would offer a more precise intraoperative context-aware decision support for computer-assisted intervention. This paper presents the CholecTriplet2022 challenge, which extends surgical action triplet modeling from recognition to detection. It includes weakly-supervised bounding box localization of every visible surgical instrument (or tool), as the key actors, and the modeling of each tool-activity in the form of <instrument, verb, target> triplet. The paper describes a baseline method and 10 new deep learning algorithms presented at the challenge to solve the task. It also provides thorough methodological comparisons of the methods, an in-depth analysis of the obtained results, their significance, and useful insights for future research directions and applications in surgery.

MoBYv2AL: Self-supervised Active Learning for Image Classification

Active learning(AL) has recently gained popularity for deep learning(DL) models. This is due to efficient and informative sampling, especially when the learner requires large-scale labelled datasets. Commonly, the sampling and training happen in stages while more batches are added. One main bottleneck in this strategy is the narrow representation learned by the model that affects the overall AL selection. We present MoBYv2AL, a novel self-supervised active learning framework for image classification. Our contribution lies in lifting MoBY, one of the most successful self-supervised learning algorithms, to the AL pipeline. Thus, we add the downstream task-aware objective function and optimize it jointly with contrastive loss. Further, we derive a data-distribution selection function from labelling the new examples. Finally, we test and study our pipeline robustness and performance for image classification tasks. We successfully achieved state-of-the-art results when compared to recent AL methods. Code available: https://github.com/razvancaramalau/MoBYv2AL

Generalized Product-of-Experts for Learning Multimodal Representations in Noisy Environments

A real-world application or setting involves interaction between different modalities (e.g., video, speech, text). In order to process the multimodal information automatically and use it for an end application, Multimodal Representation Learning (MRL) has emerged as an active area of research in recent times. MRL involves learning reliable and robust representations of information from heterogeneous sources and fusing them. However, in practice, the data acquired from different sources are typically noisy. In some extreme cases, a noise of large magnitude can completely alter the semantics of the data leading to inconsistencies in the parallel multimodal data. In this paper, we propose a novel method for multimodal representation learning in a noisy environment via the generalized product of experts technique. In the proposed method, we train a separate network for each modality to assess the credibility of information coming from that modality, and subsequently, the contribution from each modality is dynamically varied while estimating the joint distribution. We evaluate our method on two challenging benchmarks from two diverse domains: multimodal 3D hand-pose estimation and multimodal surgical video segmentation. We attain state-of-the-art performance on both benchmarks. Our extensive quantitative and qualitative evaluations show the advantages of our method compared to previous approaches.

Noisy Heuristics NAS: A Network Morphism based Neural Architecture Search using Heuristics

Network Morphism based Neural Architecture Search (NAS) is one of the most efficient methods, however, knowing where and when to add new neurons or remove dis-functional ones is generally left to black-box Reinforcement Learning models. In this paper, we present a new Network Morphism based NAS called Noisy Heuristics NAS which uses heuristics learned from manually developing neural network models and inspired by biological neuronal dynamics. Firstly, we add new neurons randomly and prune away some to select only the best fitting neurons. Secondly, we control the number of layers in the network using the relationship of hidden units to the number of input-output connections. Our method can increase or decrease the capacity or non-linearity of models online which is specified with a few meta-parameters by the user. Our method generalizes both on toy datasets and on real-world data sets such as MNIST, CIFAR-10, and CIFAR-100. The performance is comparable to the hand-engineered architecture ResNet-18 with the similar parameters.

FetReg2021: A Challenge on Placental Vessel Segmentation and Registration in Fetoscopy

Fetoscopy laser photocoagulation is a widely adopted procedure for treating Twin-to-Twin Transfusion Syndrome (TTTS). The procedure involves photocoagulation pathological anastomoses to regulate blood exchange among twins. The procedure is particularly challenging due to the limited field of view, poor manoeuvrability of the fetoscope, poor visibility, and variability in illumination. These challenges may lead to increased surgery time and incomplete ablation. Computer-assisted intervention (CAI) can provide surgeons with decision support and context awareness by identifying key structures in the scene and expanding the fetoscopic field of view through video mosaicking. Research in this domain has been hampered by the lack of high-quality data to design, develop and test CAI algorithms. Through the Fetoscopic Placental Vessel Segmentation and Registration (FetReg2021) challenge, which was organized as part of the MICCAI2021 Endoscopic Vision challenge, we released the first largescale multicentre TTTS dataset for the development of generalized and robust semantic segmentation and video mosaicking algorithms. For this challenge, we released a dataset of 2060 images, pixel-annotated for vessels, tool, fetus and background classes, from 18 in-vivo TTTS fetoscopy procedures and 18 short video clips. Seven teams participated in this challenge and their model performance was assessed on an unseen test dataset of 658 pixel-annotated images from 6 fetoscopic procedures and 6 short clips. The challenge provided an opportunity for creating generalized solutions for fetoscopic scene understanding and mosaicking. In this paper, we present the findings of the FetReg2021 challenge alongside reporting a detailed literature review for CAI in TTTS fetoscopy. Through this challenge, its analysis and the release of multi-centre fetoscopic data, we provide a benchmark for future research in this field.

Bimodal Camera Pose Prediction for Endoscopy

Deducing the 3D structure of endoscopic scenes from images remains extremely challenging. In addition to deformation and view-dependent lighting, tubular structures like the colon present problems stemming from the self-occluding, repetitive anatomical structures. In this paper, we propose SimCol, a synthetic dataset for camera pose estimation in colonoscopy and a novel method that explicitly learns a bimodal distribution to predict the endoscope pose. Our dataset replicates real colonoscope motion and highlights drawbacks of existing methods. We publish 18k RGB images from simulated colonoscopy with corresponding depth and camera poses and make our data generation environment in Unity publicly available. We evaluate different camera pose prediction methods and demonstrate that, when trained on our data, they generalize to real colonoscopy sequences and our bimodal approach outperforms prior unimodal work.

Task-Aware Active Learning for Endoscopic Image Analysis

Semantic segmentation of polyps and depth estimation are two important research problems in endoscopic image analysis. One of the main obstacles to conduct research on these research problems is lack of annotated data. Endoscopic annotations necessitate the specialist knowledge of expert endoscopists and due to this, it can be difficult to organise, expensive and time consuming. To address this problem, we investigate an active learning paradigm to reduce the number of training examples by selecting the most discriminative and diverse unlabelled examples for the task taken into consideration. Most of the existing active learning pipelines are task-agnostic in nature and are often sub-optimal to the end task. In this paper, we propose a novel task-aware active learning pipeline and applied for two important tasks in endoscopic image analysis: semantic segmentation and depth estimation. We compared our method with the competitive baselines. From the experimental results, we observe a substantial improvement over the compared baselines. Codes are available at https://github.com/thetna/endo-active-learn.

Histogram of Oriented Gradients Meet Deep Learning: A Novel Multi-task Deep Network for Medical Image Semantic Segmentation

We present our novel deep multi-task learning method for medical image segmentation. Existing multi-task methods demand ground truth annotations for both the primary and auxiliary tasks. Contrary to it, we propose to generate the pseudo-labels of an auxiliary task in an unsupervised manner. To generate the pseudo-labels, we leverage Histogram of Oriented Gradients (HOGs), one of the most widely used and powerful hand-crafted features for detection. Together with the ground truth semantic segmentation masks for the primary task and pseudo-labels for the auxiliary task, we learn the parameters of the deep network to minimise the loss of both the primary task and the auxiliary task jointly. We employed our method on two powerful and widely used semantic segmentation networks: UNet and U2Net to train in a multi-task setup. To validate our hypothesis, we performed experiments on two different medical image segmentation data sets. From the extensive quantitative and qualitative results, we observe that our method consistently improves the performance compared to the counter-part method. Moreover, our method is the winner of FetReg Endovis Sub-challenge on Semantic Segmentation organised in conjunction with MICCAI 2021.

A Unified Architecture of Semantic Segmentation and Hierarchical Generative Adversarial Networks for Expression Manipulation

Editing facial expressions by only changing what we want is a long-standing research problem in Generative Adversarial Networks (GANs) for image manipulation. Most of the existing methods that rely only on a global generator usually suffer from changing unwanted attributes along with the target attributes. Recently, hierarchical networks that consist of both a global network dealing with the whole image and multiple local networks focusing on local parts are showing success. However, these methods extract local regions by bounding boxes centred around the sparse facial key points which are non-differentiable, inaccurate and unrealistic. Hence, the solution becomes sub-optimal, introduces unwanted artefacts degrading the overall quality of the synthetic images. Moreover, a recent study has shown strong correlation between facial attributes and local semantic regions. To exploit this relationship, we designed a unified architecture of semantic segmentation and hierarchical GANs. A unique advantage of our framework is that on forward pass the semantic segmentation network conditions the generative model, and on backward pass gradients from hierarchical GANs are propagated to the semantic segmentation network, which makes our framework an end-to-end differentiable architecture. This allows both architectures to benefit from each other. To demonstrate its advantages, we evaluate our method on two challenging facial expression translation benchmarks, AffectNet and RaFD, and a semantic segmentation benchmark, CelebAMask-HQ across two popular architectures, BiSeNet and UNet. Our extensive quantitative and qualitative evaluations on both face semantic segmentation and face expression manipulation tasks validate the effectiveness of our work over existing state-of-the-art methods.

SeCGAN: Parallel Conditional Generative Adversarial Networks for Face Editing via Semantic Consistency

Semantically guided conditional Generative Adversarial Networks (cGANs) have become a popular approach for face editing in recent years. However, most existing methods introduce semantic masks as direct conditional inputs to the generator and often require the target masks to perform the corresponding translation in the RGB space. We propose SeCGAN, a novel label-guided cGAN for editing face images utilising semantic information without the need to specify target semantic masks. During training, SeCGAN has two branches of generators and discriminators operating in parallel, with one trained to translate RGB images and the other for semantic masks. To bridge the two branches in a mutually beneficial manner, we introduce a semantic consistency loss which constrains both branches to have consistent semantic outputs. Whilst both branches are required during training, the RGB branch is our primary network and the semantic branch is not needed for inference. Our results on CelebA and CelebA-HQ demonstrate that our approach is able to generate facial images with more accurate attributes, outperforming competitive baselines in terms of Target Attribute Recognition Rate whilst maintaining quality metrics such as self-supervised Fr\'{e}chet Inception Distance and Inception Score.