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Andras Jakab

Center for MR Research, University Children's Hospital Zurich, University of Zurich, Zurich, Switzerland, Neuroscience Center Zurich, University of Zurich, Zurich, Switzerland

Fetal Brain Tissue Annotation and Segmentation Challenge Results


Apr 20, 2022
Kelly Payette , Hongwei Li , Priscille de Dumast , Roxane Licandro , Hui Ji , Md Mahfuzur Rahman Siddiquee , Daguang Xu , Andriy Myronenko , Hao Liu , Yuchen Pei , Lisheng Wang , Ying Peng , Juanying Xie , Huiquan Zhang , Guiming Dong , Hao Fu , Guotai Wang , ZunHyan Rieu , Donghyeon Kim , Hyun Gi Kim , Davood Karimi , Ali Gholipour , Helena R. Torres , Bruno Oliveira , João L. Vilaça , Yang Lin , Netanell Avisdris , Ori Ben-Zvi , Dafna Ben Bashat , Lucas Fidon , Michael Aertsen , Tom Vercauteren , Daniel Sobotka , Georg Langs , Mireia Alenyà , Maria Inmaculada Villanueva , Oscar Camara , Bella Specktor Fadida , Leo Joskowicz , Liao Weibin , Lv Yi , Li Xuesong , Moona Mazher , Abdul Qayyum , Domenec Puig , Hamza Kebiri , Zelin Zhang , Xinyi Xu , Dan Wu , KuanLun Liao , YiXuan Wu , JinTai Chen , Yunzhi Xu , Li Zhao , Lana Vasung , Bjoern Menze , Meritxell Bach Cuadra , Andras Jakab

* Results from FeTA Challenge 2021, held at MICCAI; Manuscript submitted 

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QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation -- Analysis of Ranking Metrics and Benchmarking Results


Dec 19, 2021
Raghav Mehta , Angelos Filos , Ujjwal Baid , Chiharu Sako , Richard McKinley , Michael Rebsamen , Katrin Dätwyler , Raphael Meier , Piotr Radojewski , Gowtham Krishnan Murugesan , Sahil Nalawade , Chandan Ganesh , Ben Wagner , Fang F. Yu , Baowei Fei , Ananth J. Madhuranthakam , Joseph A. Maldjian , Laura Daza , Catalina Gómez , Pablo Arbeláez , Chengliang Dai , Shuo Wang , Hadrien Raynaud , Yuanhan Mo , Elsa Angelini , Yike Guo , Wenjia Bai , Subhashis Banerjee , Linmin Pei , Murat AK , Sarahi Rosas-González , Illyess Zemmoura , Clovis Tauber , Minh H. Vu , Tufve Nyholm , Tommy Löfstedt , Laura Mora Ballestar , Veronica Vilaplana , Hugh McHugh , Gonzalo Maso Talou , Alan Wang , Jay Patel , Ken Chang , Katharina Hoebel , Mishka Gidwani , Nishanth Arun , Sharut Gupta , Mehak Aggarwal , Praveer Singh , Elizabeth R. Gerstner , Jayashree Kalpathy-Cramer , Nicolas Boutry , Alexis Huard , Lasitha Vidyaratne , Md Monibor Rahman , Khan M. Iftekharuddin , Joseph Chazalon , Elodie Puybareau , Guillaume Tochon , Jun Ma , Mariano Cabezas , Xavier Llado , Arnau Oliver , Liliana Valencia , Sergi Valverde , Mehdi Amian , Mohammadreza Soltaninejad , Andriy Myronenko , Ali Hatamizadeh , Xue Feng , Quan Dou , Nicholas Tustison , Craig Meyer , Nisarg A. Shah , Sanjay Talbar , Marc-Andr Weber , Abhishek Mahajan , Andras Jakab , Roland Wiest , Hassan M. Fathallah-Shaykh , Arash Nazeri , Mikhail Milchenko , Daniel Marcus , Aikaterini Kotrotsou , Rivka Colen , John Freymann , Justin Kirby , Christos Davatzikos , Bjoern Menze , Spyridon Bakas , Yarin Gal , Tal Arbel

* Under submission at MELBA journal 

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Synthetic magnetic resonance images for domain adaptation: Application to fetal brain tissue segmentation


Nov 08, 2021
Priscille de Dumast , Hamza Kebiri , Kelly Payette , Andras Jakab , Hélène Lajous , Meritxell Bach Cuadra

* 4 pages, 4 figures. This work has been submitted to the IEEE for possible publication. Copyright may be transferred without notice, after which this version may no longer be accessible 

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FaBiAN: A Fetal Brain magnetic resonance Acquisition Numerical phantom


Sep 06, 2021
Hélène Lajous , Christopher W. Roy , Tom Hilbert , Priscille de Dumast , Sébastien Tourbier , Yasser Alemán-Gómez , Jérôme Yerly , Thomas Yu , Hamza Kebiri , Kelly Payette , Jean-Baptiste Ledoux , Reto Meuli , Patric Hagmann , Andras Jakab , Vincent Dunet , Mériam Koob , Tobias Kober , Matthias Stuber , Meritxell Bach Cuadra

* 23 pages, 9 figures (including Supplementary Material), 4 tables, 1 supplement. Submitted to Scientific Reports (2021) 

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The RSNA-ASNR-MICCAI BraTS 2021 Benchmark on Brain Tumor Segmentation and Radiogenomic Classification


Jul 05, 2021
Ujjwal Baid , Satyam Ghodasara , Michel Bilello , Suyash Mohan , Evan Calabrese , Errol Colak , Keyvan Farahani , Jayashree Kalpathy-Cramer , Felipe C. Kitamura , Sarthak Pati , Luciano M. Prevedello , Jeffrey D. Rudie , Chiharu Sako , Russell T. Shinohara , Timothy Bergquist , Rong Chai , James Eddy , Julia Elliott , Walter Reade , Thomas Schaffter , Thomas Yu , Jiaxin Zheng , BraTS Annotators , Christos Davatzikos , John Mongan , Christopher Hess , Soonmee Cha , Javier Villanueva-Meyer , John B. Freymann , Justin S. Kirby , Benedikt Wiestler , Priscila Crivellaro , Rivka R. Colen , Aikaterini Kotrotsou , Daniel Marcus , Mikhail Milchenko , Arash Nazeri , Hassan Fathallah-Shaykh , Roland Wiest , Andras Jakab , Marc-Andre Weber , Abhishek Mahajan , Bjoern Menze , Adam E. Flanders , Spyridon Bakas

* 17 pages, 2 figures, 1 table 

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The Federated Tumor Segmentation (FeTS) Challenge


May 14, 2021
Sarthak Pati , Ujjwal Baid , Maximilian Zenk , Brandon Edwards , Micah Sheller , G. Anthony Reina , Patrick Foley , Alexey Gruzdev , Jason Martin , Shadi Albarqouni , Yong Chen , Russell Taki Shinohara , Annika Reinke , David Zimmerer , John B. Freymann , Justin S. Kirby , Christos Davatzikos , Rivka R. Colen , Aikaterini Kotrotsou , Daniel Marcus , Mikhail Milchenko , Arash Nazeri , Hassan Fathallah-Shaykh , Roland Wiest , Andras Jakab , Marc-Andre Weber , Abhishek Mahajan , Lena Maier-Hein , Jens Kleesiek , Bjoern Menze , Klaus Maier-Hein , Spyridon Bakas


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A comparison of automatic multi-tissue segmentation methods of the human fetal brain using the FeTA Dataset


Oct 29, 2020
Kelly Payette , Priscille de Dumast , Hamza Kebiri , Ivan Ezhov , Johannes C. Paetzold , Suprosanna Shit , Asim Iqbal , Romesa Khan , Raimund Kottke , Patrice Grehten , Hui Ji , Levente Lanczi , Marianna Nagy , Monika Beresova , Thi Dao Nguyen , Giancarlo Natalucci , Theofanis Karayannis , Bjoern Menze , Meritxell Bach Cuadra , Andras Jakab

* Paper currently under review 

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Implicit Modeling with Uncertainty Estimation for Intravoxel Incoherent Motion Imaging


Oct 22, 2018
Lin Zhang , Valery Vishnevskiy , Andras Jakab , Orcun Goksel


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