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"Information Extraction": models, code, and papers

Sequence-to-Sequence Models for Extracting Information from Registration and Legal Documents

Jan 14, 2022
Ramon Pires, Fábio C. de Souza, Guilherme Rosa, Roberto A. Lotufo, Rodrigo Nogueira

A typical information extraction pipeline consists of token- or span-level classification models coupled with a series of pre- and post-processing scripts. In a production pipeline, requirements often change, with classes being added and removed, which leads to nontrivial modifications to the source code and the possible introduction of bugs. In this work, we evaluate sequence-to-sequence models as an alternative to token-level classification methods for information extraction of legal and registration documents. We finetune models that jointly extract the information and generate the output already in a structured format. Post-processing steps are learned during training, thus eliminating the need for rule-based methods and simplifying the pipeline. Furthermore, we propose a novel method to align the output with the input text, thus facilitating system inspection and auditing. Our experiments on four real-world datasets show that the proposed method is an alternative to classical pipelines.

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Hierarchical RNN for Information Extraction from Lawsuit Documents

Apr 25, 2018
Xi Rao, Zhenxing Ke

Every lawsuit document contains the information about the party's claim, court's analysis, decision and others, and all of this information are helpful to understand the case better and predict the judge's decision on similar case in the future. However, the extraction of these information from the document is difficult because the language is too complicated and sentences varied at length. We treat this problem as a task of sequence labeling, and this paper presents the first research to extract relevant information from the civil lawsuit document in China with the hierarchical RNN framework.

* IMECS2018 
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Musical Information Extraction from the Singing Voice

Apr 07, 2022
Preeti Rao

Music information retrieval is currently an active research area that addresses the extraction of musically important information from audio signals, and the applications of such information. The extracted information can be used for search and retrieval of music in recommendation systems, or to aid musicological studies or even in music learning. Sophisticated signal processing techniques are applied to convert low-level acoustic signal properties to musical attributes which are further embedded in a rule-based or statistical classification framework to link with high-level descriptions such as melody, genre, mood and artist type. Vocal music comprises a large and interesting category of music where the lead instrument is the singing voice. The singing voice is more versatile than many musical instruments and therefore poses interesting challenges to information retrieval systems. In this paper, we provide a brief overview of research in vocal music processing followed by a description of related work at IIT Bombay leading to the development of an interface for melody detection of singing voice in polyphony.

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Dimension Reduction by Mutual Information Feature Extraction

Jul 14, 2012
Ali Shadvar

During the past decades, to study high-dimensional data in a large variety of problems, researchers have proposed many Feature Extraction algorithms. One of the most effective approaches for optimal feature extraction is based on mutual information (MI). However it is not always easy to get an accurate estimation for high dimensional MI. In terms of MI, the optimal feature extraction is creating a feature set from the data which jointly have the largest dependency on the target class and minimum redundancy. In this paper, a component-by-component gradient ascent method is proposed for feature extraction which is based on one-dimensional MI estimates. We will refer to this algorithm as Mutual Information Feature Extraction (MIFX). The performance of this proposed method is evaluated using UCI databases. The results indicate that MIFX provides a robust performance over different data sets which are almost always the best or comparable to the best ones.

* International Journal of Computer Science & Information Technology (IJCSIT). arXiv admin note: substantial text overlap with arXiv:1206.2058 
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Annotating Social Determinants of Health Using Active Learning, and Characterizing Determinants Using Neural Event Extraction

Apr 11, 2020
Kevin Lybarger, Mari Ostendorf, Meliha Yetisgen

Social determinants of health (SDOH) affect health outcomes, and knowledge of SDOH can inform clinical decision-making. Automatically extracting SDOH information from clinical text requires data-driven information extraction models trained on annotated corpora that are heterogeneous and frequently include critical SDOH. This work presents a new corpus with SDOH annotations, a novel active learning framework, and the first extraction results on the new corpus. The Social History Annotation Corpus (SHAC) includes 4,480 social history sections with detailed annotation for 12 SDOH characterizing the status, extent, and temporal information of 18K distinct events. We introduce a novel active learning framework that selects samples for annotation using a surrogate text classification task as a proxy for a more complex event extraction task. The active learning framework successfully increases the frequency of health risk factors and improves automatic detection of these events over undirected annotation. An event extraction model trained on SHAC achieves high extraction performance for substance use status (0.82-0.93 F1), employment status (0.81-0.86 F1), and living status type (0.81-0.93 F1) on data from three institutions.

* 29 pages, 14 figures, 4 tables 
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Informative Causality Extraction from Medical Literature via Dependency-tree based Patterns

Mar 13, 2022
Md. Ahsanul Kabir, AlJohara Almulhim, Xiao Luo, Mohammad Al Hasan

Extracting cause-effect entities from medical literature is an important task in medical information retrieval. A solution for solving this task can be used for compilation of various causality relations, such as, causality between disease and symptoms, between medications and side effects, between genes and diseases, etc. Existing solutions for extracting cause-effect entities work well for sentences where the cause and the effect phrases are name entities, single-word nouns, or noun phrases consisting of two to three words. Unfortunately, in medical literature, cause and effect phrases in a sentence are not simply nouns or noun phrases, rather they are complex phrases consisting of several words, and existing methods fail to correctly extract the cause and effect entities in such sentences. Partial extraction of cause and effect entities conveys poor quality, non informative, and often, contradictory facts, comparing to the one intended in the given sentence. In this work, we solve this problem by designing an unsupervised method for cause and effect phrase extraction, PatternCausality, which is specifically suitable for the medical literature. Our proposed approach first uses a collection of cause-effect dependency patterns as template to extract head words of cause and effect phrases and then it uses a novel phrase extraction method to obtain complete and meaningful cause and effect phrases from a sentence. Experiments on a cause-effect dataset built from sentences from PubMed articles show that for extracting cause and effect entities, PatternCausality is substantially better than the existing methods with an order of magnitude improvement in the F-score metric over the best of the existing methods.

* Journal of Healthcare Informatics Research 2022 
* 22 pages without comment 
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Multimodal Learning on Graphs for Disease Relation Extraction

Mar 16, 2022
Yucong Lin, Keming Lu, Sheng Yu, Tianxi Cai, Marinka Zitnik

Objective: Disease knowledge graphs are a way to connect, organize, and access disparate information about diseases with numerous benefits for artificial intelligence (AI). To create knowledge graphs, it is necessary to extract knowledge from multimodal datasets in the form of relationships between disease concepts and normalize both concepts and relationship types. Methods: We introduce REMAP, a multimodal approach for disease relation extraction and classification. The REMAP machine learning approach jointly embeds a partial, incomplete knowledge graph and a medical language dataset into a compact latent vector space, followed by aligning the multimodal embeddings for optimal disease relation extraction. Results: We apply REMAP approach to a disease knowledge graph with 96,913 relations and a text dataset of 1.24 million sentences. On a dataset annotated by human experts, REMAP improves text-based disease relation extraction by 10.0% (accuracy) and 17.2% (F1-score) by fusing disease knowledge graphs with text information. Further, REMAP leverages text information to recommend new relationships in the knowledge graph, outperforming graph-based methods by 8.4% (accuracy) and 10.4% (F1-score). Discussion: Systematized knowledge is becoming the backbone of AI, creating opportunities to inject semantics into AI and fully integrate it into machine learning algorithms. While prior semantic knowledge can assist in extracting disease relationships from text, existing methods can not fully leverage multimodal datasets. Conclusion: REMAP is a multimodal approach for extracting and classifying disease relationships by fusing structured knowledge and text information. REMAP provides a flexible neural architecture to easily find, access, and validate AI-driven relationships between disease concepts.

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Improving Information Extraction by Acquiring External Evidence with Reinforcement Learning

Sep 27, 2016
Karthik Narasimhan, Adam Yala, Regina Barzilay

Most successful information extraction systems operate with access to a large collection of documents. In this work, we explore the task of acquiring and incorporating external evidence to improve extraction accuracy in domains where the amount of training data is scarce. This process entails issuing search queries, extraction from new sources and reconciliation of extracted values, which are repeated until sufficient evidence is collected. We approach the problem using a reinforcement learning framework where our model learns to select optimal actions based on contextual information. We employ a deep Q-network, trained to optimize a reward function that reflects extraction accuracy while penalizing extra effort. Our experiments on two databases -- of shooting incidents, and food adulteration cases -- demonstrate that our system significantly outperforms traditional extractors and a competitive meta-classifier baseline.

* Appearing in EMNLP 2016 (12 pages incl. supplementary material) 
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Discourse in Multimedia: A Case Study in Information Extraction

Nov 13, 2018
Mrinmaya Sachan, Kumar Avinava Dubey, Eduard H. Hovy, Tom M. Mitchell, Dan Roth, Eric P. Xing

To ensure readability, text is often written and presented with due formatting. These text formatting devices help the writer to effectively convey the narrative. At the same time, these help the readers pick up the structure of the discourse and comprehend the conveyed information. There have been a number of linguistic theories on discourse structure of text. However, these theories only consider unformatted text. Multimedia text contains rich formatting features which can be leveraged for various NLP tasks. In this paper, we study some of these discourse features in multimedia text and what communicative function they fulfil in the context. We examine how these multimedia discourse features can be used to improve an information extraction system. We show that the discourse and text layout features provide information that is complementary to lexical semantic information commonly used for information extraction. As a case study, we use these features to harvest structured subject knowledge of geometry from textbooks. We show that the harvested structured knowledge can be used to improve an existing solver for geometry problems, making it more accurate as well as more explainable.

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Jointly Multiple Events Extraction via Attention-based Graph Information Aggregation

Oct 23, 2018
Xiao Liu, Zhunchen Luo, Heyan Huang

Event extraction is of practical utility in natural language processing. In the real world, it is a common phenomenon that multiple events existing in the same sentence, where extracting them are more difficult than extracting a single event. Previous works on modeling the associations between events by sequential modeling methods suffer a lot from the low efficiency in capturing very long-range dependencies. In this paper, we propose a novel Jointly Multiple Events Extraction (JMEE) framework to jointly extract multiple event triggers and arguments by introducing syntactic shortcut arcs to enhance information flow and attention-based graph convolution networks to model graph information. The experiment results demonstrate that our proposed framework achieves competitive results compared with state-of-the-art methods.

* EMNLP. 1 (2018) 1247-1256 
* accepted by EMNLP 2018 
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