Topic Modeling on Clinical Social Work Notes for Exploring Social Determinants of Health Factors

Most research studying social determinants of health (SDoH) has focused on physician notes or structured elements of the electronic medical record (EMR). We hypothesize that clinical notes from social workers, whose role is to ameliorate social and economic factors, might provide a richer source of data on SDoH. We sought to perform topic modeling to identify robust topics of discussion within a large cohort of social work notes. We retrieved a diverse, deidentified corpus of 0.95 million clinical social work notes from 181,644 patients at the University of California, San Francisco. We used word frequency analysis and Latent Dirichlet Allocation (LDA) topic modeling analysis to characterize this corpus and identify potential topics of discussion. Word frequency analysis identified both medical and non-medical terms associated with specific ICD10 chapters. The LDA topic modeling analysis extracted 11 topics related to social determinants of health risk factors including financial status, abuse history, social support, risk of death, and mental health. In addition, the topic modeling approach captured the variation between different types of social work notes and across patients with different types of diseases or conditions. We demonstrated that social work notes contain rich, unique, and otherwise unobtainable information on an individual's SDoH.

A Topic Modeling Approach to Classifying Open Street Map Health Clinics and Schools in Sub-Saharan Africa

Data deprivation, or the lack of easily available and actionable information on the well-being of individuals, is a significant challenge for the developing world and an impediment to the design and operationalization of policies intended to alleviate poverty. In this paper we explore the suitability of data derived from OpenStreetMap to proxy for the location of two crucial public services: schools and health clinics. Thanks to the efforts of thousands of digital humanitarians, online mapping repositories such as OpenStreetMap contain millions of records on buildings and other structures, delineating both their location and often their use. Unfortunately much of this data is locked in complex, unstructured text rendering it seemingly unsuitable for classifying schools or clinics. We apply a scalable, unsupervised learning method to unlabeled OpenStreetMap building data to extract the location of schools and health clinics in ten countries in Africa. We find the topic modeling approach greatly improves performance versus reliance on structured keys alone. We validate our results by comparing schools and clinics identified by our OSM method versus those identified by the WHO, and describe OSM coverage gaps more broadly.

Mitigating Data Sparsity for Short Text Topic Modeling by Topic-Semantic Contrastive Learning

To overcome the data sparsity issue in short text topic modeling, existing methods commonly rely on data augmentation or the data characteristic of short texts to introduce more word co-occurrence information. However, most of them do not make full use of the augmented data or the data characteristic: they insufficiently learn the relations among samples in data, leading to dissimilar topic distributions of semantically similar text pairs. To better address data sparsity, in this paper we propose a novel short text topic modeling framework, Topic-Semantic Contrastive Topic Model (TSCTM). To sufficiently model the relations among samples, we employ a new contrastive learning method with efficient positive and negative sampling strategies based on topic semantics. This contrastive learning method refines the representations, enriches the learning signals, and thus mitigates the sparsity issue. Extensive experimental results show that our TSCTM outperforms state-of-the-art baselines regardless of the data augmentation availability, producing high-quality topics and topic distributions.

Topics as Entity Clusters: Entity-based Topics from Language Models and Graph Neural Networks

Topic models aim to reveal the latent structure behind a corpus, typically conducted over a bag-of-words representation of documents. In the context of topic modeling, most vocabulary is either irrelevant for uncovering underlying topics or contains strong relationships with relevant concepts, impacting the interpretability of these topics. Furthermore, their limited expressiveness and dependency on language demand considerable computation resources. Hence, we propose a novel approach for cluster-based topic modeling that employs conceptual entities. Entities are language-agnostic representations of real-world concepts rich in relational information. To this end, we extract vector representations of entities from (i) an encyclopedic corpus using a language model; and (ii) a knowledge base using a graph neural network. We demonstrate that our approach consistently outperforms other state-of-the-art topic models across coherency metrics and find that the explicit knowledge encoded in the graph-based embeddings provides more coherent topics than the implicit knowledge encoded with the contextualized embeddings of language models.

Human in the loop: How to effectively create coherent topics by manually labeling only a few documents per class

Few-shot methods for accurate modeling under sparse label-settings have improved significantly. However, the applications of few-shot modeling in natural language processing remain solely in the field of document classification. With recent performance improvements, supervised few-shot methods, combined with a simple topic extraction method pose a significant challenge to unsupervised topic modeling methods. Our research shows that supervised few-shot learning, combined with a simple topic extraction method, can outperform unsupervised topic modeling techniques in terms of generating coherent topics, even when only a few labeled documents per class are used.

Coordinated Topic Modeling

We propose a new problem called coordinated topic modeling that imitates human behavior while describing a text corpus. It considers a set of well-defined topics like the axes of a semantic space with a reference representation. It then uses the axes to model a corpus for easily understandable representation. This new task helps represent a corpus more interpretably by reusing existing knowledge and benefits the corpora comparison task. We design ECTM, an embedding-based coordinated topic model that effectively uses the reference representation to capture the target corpus-specific aspects while maintaining each topic's global semantics. In ECTM, we introduce the topic- and document-level supervision with a self-training mechanism to solve the problem. Finally, extensive experiments on multiple domains show the superiority of our model over other baselines.

Very Large Language Model as a Unified Methodology of Text Mining

Text data mining is the process of deriving essential information from language text. Typical text mining tasks include text categorization, text clustering, topic modeling, information extraction, and text summarization. Various data sets are collected and various algorithms are designed for the different types of tasks. In this paper, I present a blue sky idea that very large language model (VLLM) will become an effective unified methodology of text mining. I discuss at least three advantages of this new methodology against conventional methods. Finally I discuss the challenges in the design and development of VLLM techniques for text mining.

Federated Neural Topic Models

Over the last years, topic modeling has emerged as a powerful technique for organizing and summarizing big collections of documents or searching for particular patterns in them. However, privacy concerns arise when cross-analyzing data from different sources is required. Federated topic modeling solves this issue by allowing multiple parties to jointly train a topic model without sharing their data. While several federated approximations of classical topic models do exist, no research has been carried out on their application for neural topic models. To fill this gap, we propose and analyze a federated implementation based on state-of-the-art neural topic modeling implementations, showing its benefits when there is a diversity of topics across the nodes' documents and the need to build a joint model. Our approach is by construction theoretically and in practice equivalent to a centralized approach but preserves the privacy of the nodes.

Experiments on Generalizability of BERTopic on Multi-Domain Short Text

Topic modeling is widely used for analytically evaluating large collections of textual data. One of the most popular topic techniques is Latent Dirichlet Allocation (LDA), which is flexible and adaptive, but not optimal for e.g. short texts from various domains. We explore how the state-of-the-art BERTopic algorithm performs on short multi-domain text and find that it generalizes better than LDA in terms of topic coherence and diversity. We further analyze the performance of the HDBSCAN clustering algorithm utilized by BERTopic and find that it classifies a majority of the documents as outliers. This crucial, yet overseen problem excludes too many documents from further analysis. When we replace HDBSCAN with k-Means, we achieve similar performance, but without outliers.

Political and Economic Patterns in COVID-19 News: From Lockdown to Vaccination

The purpose of this study is to analyse COVID-19 related news published across different geographical places, in order to gain insights in reporting differences. The COVID-19 pandemic had a major outbreak in January 2020 and was followed by different preventive measures, lockdown, and finally by the process of vaccination. To date, more comprehensive analysis of news related to COVID-19 pandemic are missing, especially those which explain what aspects of this pandemic are being reported by newspapers inserted in different economies and belonging to different political alignments. Since LDA is often less coherent when there are news articles published across the world about an event and you look answers for specific queries. It is because of having semantically different content. To address this challenge, we performed pooling of news articles based on information retrieval using TF-IDF score in a data processing step and topic modeling using LDA with combination of 1 to 6 ngrams. We used VADER sentiment analyzer to analyze the differences in sentiments in news articles reported across different geographical places. The novelty of this study is to look at how COVID-19 pandemic was reported by the media, providing a comparison among countries in different political and economic contexts. Our findings suggest that the news reporting by newspapers with different political alignment support the reported content. Also, economic issues reported by newspapers depend on economy of the place where a newspaper resides.