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PEER: A Comprehensive and Multi-Task Benchmark for Protein Sequence Understanding


Jun 05, 2022
Minghao Xu, Zuobai Zhang, Jiarui Lu, Zhaocheng Zhu, Yangtian Zhang, Chang Ma, Runcheng Liu, Jian Tang

* Research project paper. arXiv v1: release all benchmark results (source code will be released soon in the next version) 

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Neural-Symbolic Models for Logical Queries on Knowledge Graphs


May 16, 2022
Zhaocheng Zhu, Mikhail Galkin, Zuobai Zhang, Jian Tang

* ICML 2022 

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A Roadmap for Big Model


Apr 02, 2022
Sha Yuan, Hanyu Zhao, Shuai Zhao, Jiahong Leng, Yangxiao Liang, Xiaozhi Wang, Jifan Yu, Xin Lv, Zhou Shao, Jiaao He, Yankai Lin, Xu Han, Zhenghao Liu, Ning Ding, Yongming Rao, Yizhao Gao, Liang Zhang, Ming Ding, Cong Fang, Yisen Wang, Mingsheng Long, Jing Zhang, Yinpeng Dong, Tianyu Pang, Peng Cui, Lingxiao Huang, Zheng Liang, Huawei Shen, Hui Zhang, Quanshi Zhang, Qingxiu Dong, Zhixing Tan, Mingxuan Wang, Shuo Wang, Long Zhou, Haoran Li, Junwei Bao, Yingwei Pan, Weinan Zhang, Zhou Yu, Rui Yan, Chence Shi, Minghao Xu, Zuobai Zhang, Guoqiang Wang, Xiang Pan, Mengjie Li, Xiaoyu Chu, Zijun Yao, Fangwei Zhu, Shulin Cao, Weicheng Xue, Zixuan Ma, Zhengyan Zhang, Shengding Hu, Yujia Qin, Chaojun Xiao, Zheni Zeng, Ganqu Cui, Weize Chen, Weilin Zhao, Yuan Yao, Peng Li, Wenzhao Zheng, Wenliang Zhao, Ziyi Wang, Borui Zhang, Nanyi Fei, Anwen Hu, Zenan Ling, Haoyang Li, Boxi Cao, Xianpei Han, Weidong Zhan, Baobao Chang, Hao Sun, Jiawen Deng, Chujie Zheng, Juanzi Li, Lei Hou, Xigang Cao, Jidong Zhai, Zhiyuan Liu, Maosong Sun, Jiwen Lu, Zhiwu Lu, Qin Jin, Ruihua Song, Ji-Rong Wen, Zhouchen Lin, Liwei Wang, Hang Su, Jun Zhu, Zhifang Sui, Jiajun Zhang, Yang Liu, Xiaodong He, Minlie Huang, Jian Tang, Jie Tang

* arXiv admin note: text overlap with arXiv:2107.06499 by other authors 

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Protein Representation Learning by Geometric Structure Pretraining


Mar 14, 2022
Zuobai Zhang, Minghao Xu, Arian Jamasb, Vijil Chenthamarakshan, Aurelie Lozano, Payel Das, Jian Tang


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Structured Multi-task Learning for Molecular Property Prediction


Feb 22, 2022
Shengchao Liu, Meng Qu, Zuobai Zhang, Huiyu Cai, Jian Tang


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TorchDrug: A Powerful and Flexible Machine Learning Platform for Drug Discovery


Feb 16, 2022
Zhaocheng Zhu, Chence Shi, Zuobai Zhang, Shengchao Liu, Minghao Xu, Xinyu Yuan, Yangtian Zhang, Junkun Chen, Huiyu Cai, Jiarui Lu, Chang Ma, Runcheng Liu, Louis-Pascal Xhonneux, Meng Qu, Jian Tang


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Neural Bellman-Ford Networks: A General Graph Neural Network Framework for Link Prediction


Jun 16, 2021
Zhaocheng Zhu, Zuobai Zhang, Louis-Pascal Xhonneux, Jian Tang


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