Towards Globally Predictable k-Space Interpolation: A White-box Transformer Approach

Interpolating missing data in k-space is essential for accelerating imaging. However, existing methods, including convolutional neural network-based deep learning, primarily exploit local predictability while overlooking the inherent global dependencies in k-space. Recently, Transformers have demonstrated remarkable success in natural language processing and image analysis due to their ability to capture long-range dependencies. This inspires the use of Transformers for k-space interpolation to better exploit its global structure. However, their lack of interpretability raises concerns regarding the reliability of interpolated data. To address this limitation, we propose GPI-WT, a white-box Transformer framework based on Globally Predictable Interpolation (GPI) for k-space. Specifically, we formulate GPI from the perspective of annihilation as a novel k-space structured low-rank (SLR) model. The global annihilation filters in the SLR model are treated as learnable parameters, and the subgradients of the SLR model naturally induce a learnable attention mechanism. By unfolding the subgradient-based optimization algorithm of SLR into a cascaded network, we construct the first white-box Transformer specifically designed for accelerated MRI. Experimental results demonstrate that the proposed method significantly outperforms state-of-the-art approaches in k-space interpolation accuracy while providing superior interpretability.

DUN-SRE: Deep Unrolling Network with Spatiotemporal Rotation Equivariance for Dynamic MRI Reconstruction

Dynamic Magnetic Resonance Imaging (MRI) exhibits transformation symmetries, including spatial rotation symmetry within individual frames and temporal symmetry along the time dimension. Explicit incorporation of these symmetry priors in the reconstruction model can significantly improve image quality, especially under aggressive undersampling scenarios. Recently, Equivariant convolutional neural network (ECNN) has shown great promise in exploiting spatial symmetry priors. However, existing ECNNs critically fail to model temporal symmetry, arguably the most universal and informative structural prior in dynamic MRI reconstruction. To tackle this issue, we propose a novel Deep Unrolling Network with Spatiotemporal Rotation Equivariance (DUN-SRE) for Dynamic MRI Reconstruction. The DUN-SRE establishes spatiotemporal equivariance through a (2+1)D equivariant convolutional architecture. In particular, it integrates both the data consistency and proximal mapping module into a unified deep unrolling framework. This architecture ensures rigorous propagation of spatiotemporal rotation symmetry constraints throughout the reconstruction process, enabling more physically accurate modeling of cardiac motion dynamics in cine MRI. In addition, a high-fidelity group filter parameterization mechanism is developed to maintain representation precision while enforcing symmetry constraints. Comprehensive experiments on Cardiac CINE MRI datasets demonstrate that DUN-SRE achieves state-of-the-art performance, particularly in preserving rotation-symmetric structures, offering strong generalization capability to a broad range of dynamic MRI reconstruction tasks.

Patch-based Reconstruction for Unsupervised Dynamic MRI using Learnable Tensor Function with Implicit Neural Representation

Dynamic MRI plays a vital role in clinical practice by capturing both spatial details and dynamic motion, but its high spatiotemporal resolution is often limited by long scan times. Deep learning (DL)-based methods have shown promising performance in accelerating dynamic MRI. However, most existing algorithms rely on large fully-sampled datasets for training, which are difficult to acquire. Recently, implicit neural representation (INR) has emerged as a powerful scan-specific paradigm for accelerated MRI, which models signals as a continuous function over spatiotemporal coordinates. Although this approach achieves efficient continuous modeling of dynamic images and robust reconstruction, it faces challenges in recovering fine details and increasing computational demands for high dimensional data representation. To enhance both efficiency and reconstruction quality, we propose TenF-INR, a novel patch-based unsupervised framework that employs INR to model bases of tensor decomposition, enabling efficient and accurate modeling of dynamic MR images with learnable tensor functions. By exploiting strong correlations in similar spatial image patches and in the temporal direction, TenF-INR enforces multidimensional low-rankness and implements patch-based reconstruction with the benefits of continuous modeling. We compare TenF-INR with state-of-the-art methods, including supervised DL methods and unsupervised approaches. Experimental results demonstrate that TenF-INR achieves high acceleration factors up to 21, outperforming all comparison methods in image quality, temporal fidelity, and quantitative metrics, even surpassing the supervised methods.

SRE-CNN: A Spatiotemporal Rotation-Equivariant CNN for Cardiac Cine MR Imaging

Dynamic MR images possess various transformation symmetries,including the rotation symmetry of local features within the image and along the temporal dimension. Utilizing these symmetries as prior knowledge can facilitate dynamic MR imaging with high spatiotemporal resolution. Equivariant CNN is an effective tool to leverage the symmetry priors. However, current equivariant CNN methods fail to fully exploit these symmetry priors in dynamic MR imaging. In this work, we propose a novel framework of Spatiotemporal Rotation-Equivariant CNN (SRE-CNN), spanning from the underlying high-precision filter design to the construction of the temporal-equivariant convolutional module and imaging model, to fully harness the rotation symmetries inherent in dynamic MR images. The temporal-equivariant convolutional module enables exploitation the rotation symmetries in both spatial and temporal dimensions, while the high-precision convolutional filter, based on parametrization strategy, enhances the utilization of rotation symmetry of local features to improve the reconstruction of detailed anatomical structures. Experiments conducted on highly undersampled dynamic cardiac cine data (up to 20X) have demonstrated the superior performance of our proposed approach, both quantitatively and qualitatively.

LINEAR: Learning Implicit Neural Representation With Explicit Physical Priors for Accelerated Quantitative T1rho Mapping

Quantitative T1rho parameter mapping has shown promise in clinical and research studies. However, it suffers from long scan times. Deep learning-based techniques have been successfully applied in accelerated quantitative MR parameter mapping. However, most methods require fully-sampled training dataset, which is impractical in the clinic. In this study, a novel subject-specific unsupervised method based on the implicit neural representation is proposed to reconstruct images from highly undersampled k-space data and estimate parameter maps from reconstructions, which only takes spatiotemporal coordinates as the input. Specifically, the proposed method learned a implicit neural representation of the MR images driven by two explicit priors of images (or k-space data), including the low-rankness of Hankel matrix, and the self-consistency of k-space data. The ablation experiments show that the proposed method can characterize the physical priors of MR images well. Moreover,experimental results of retrospective and prospective data show that the proposed method outperforms the state-of-the-art methods in terms of supressing artifacts and achieving the lowest error.

Joint Diffusion: Mutual Consistency-Driven Diffusion Model for PET-MRI Co-Reconstruction

Positron Emission Tomography and Magnetic Resonance Imaging (PET-MRI) systems can obtain functional and anatomical scans. PET suffers from a low signal-to-noise ratio. Meanwhile, the k-space data acquisition process in MRI is time-consuming. The study aims to accelerate MRI and enhance PET image quality. Conventional approaches involve the separate reconstruction of each modality within PET-MRI systems. However, there exists complementary information among multi-modal images. The complementary information can contribute to image reconstruction. In this study, we propose a novel PET-MRI joint reconstruction model employing a mutual consistency-driven diffusion mode, namely MC-Diffusion. MC-Diffusion learns the joint probability distribution of PET and MRI for utilizing complementary information. We conducted a series of contrast experiments about LPLS, Joint ISAT-net and MC-Diffusion by the ADNI dataset. The results underscore the qualitative and quantitative improvements achieved by MC-Diffusion, surpassing the state-of-the-art method.

A Two-Stage Generative Model with CycleGAN and Joint Diffusion for MRI-based Brain Tumor Detection

Accurate detection and segmentation of brain tumors is critical for medical diagnosis. However, current supervised learning methods require extensively annotated images and the state-of-the-art generative models used in unsupervised methods often have limitations in covering the whole data distribution. In this paper, we propose a novel framework Two-Stage Generative Model (TSGM) that combines Cycle Generative Adversarial Network (CycleGAN) and Variance Exploding stochastic differential equation using joint probability (VE-JP) to improve brain tumor detection and segmentation. The CycleGAN is trained on unpaired data to generate abnormal images from healthy images as data prior. Then VE-JP is implemented to reconstruct healthy images using synthetic paired abnormal images as a guide, which alters only pathological regions but not regions of healthy. Notably, our method directly learned the joint probability distribution for conditional generation. The residual between input and reconstructed images suggests the abnormalities and a thresholding method is subsequently applied to obtain segmentation results. Furthermore, the multimodal results are weighted with different weights to improve the segmentation accuracy further. We validated our method on three datasets, and compared with other unsupervised methods for anomaly detection and segmentation. The DSC score of 0.8590 in BraTs2020 dataset, 0.6226 in ITCS dataset and 0.7403 in In-house dataset show that our method achieves better segmentation performance and has better generalization.

Score-based Diffusion Models With Self-supervised Learning For Accelerated 3D Multi-contrast Cardiac Magnetic Resonance Imaging

Long scan time significantly hinders the widespread applications of three-dimensional multi-contrast cardiac magnetic resonance (3D-MC-CMR) imaging. This study aims to accelerate 3D-MC-CMR acquisition by a novel method based on score-based diffusion models with self-supervised learning. Specifically, we first establish a mapping between the undersampled k-space measurements and the MR images, utilizing a self-supervised Bayesian reconstruction network. Secondly, we develop a joint score-based diffusion model on 3D-MC-CMR images to capture their inherent distribution. The 3D-MC-CMR images are finally reconstructed using the conditioned Langenvin Markov chain Monte Carlo sampling. This approach enables accurate reconstruction without fully sampled training data. Its performance was tested on the dataset acquired by a 3D joint myocardial T1 and T1rho mapping sequence. The T1 and T1rho maps were estimated via a dictionary matching method from the reconstructed images. Experimental results show that the proposed method outperforms traditional compressed sensing and existing self-supervised deep learning MRI reconstruction methods. It also achieves high quality T1 and T1rho parametric maps close to the reference maps obtained by traditional mapping sequences, even at a high acceleration rate of 14.

Matrix Completion-Informed Deep Unfolded Equilibrium Models for Self-Supervised k-Space Interpolation in MRI

Recently, regularization model-driven deep learning (DL) has gained significant attention due to its ability to leverage the potent representational capabilities of DL while retaining the theoretical guarantees of regularization models. However, most of these methods are tailored for supervised learning scenarios that necessitate fully sampled labels, which can pose challenges in practical MRI applications. To tackle this challenge, we propose a self-supervised DL approach for accelerated MRI that is theoretically guaranteed and does not rely on fully sampled labels. Specifically, we achieve neural network structure regularization by exploiting the inherent structural low-rankness of the $k$-space data. Simultaneously, we constrain the network structure to resemble a nonexpansive mapping, ensuring the network's convergence to a fixed point. Thanks to this well-defined network structure, this fixed point can completely reconstruct the missing $k$-space data based on matrix completion theory, even in situations where full-sampled labels are unavailable. Experiments validate the effectiveness of our proposed method and demonstrate its superiority over existing self-supervised approaches and traditional regularization methods, achieving performance comparable to that of supervised learning methods in certain scenarios.

Convex Latent-Optimized Adversarial Regularizers for Imaging Inverse Problems

Recently, data-driven techniques have demonstrated remarkable effectiveness in addressing challenges related to MR imaging inverse problems. However, these methods still exhibit certain limitations in terms of interpretability and robustness. In response, we introduce Convex Latent-Optimized Adversarial Regularizers (CLEAR), a novel and interpretable data-driven paradigm. CLEAR represents a fusion of deep learning (DL) and variational regularization. Specifically, we employ a latent optimization technique to adversarially train an input convex neural network, and its set of minima can fully represent the real data manifold. We utilize it as a convex regularizer to formulate a CLEAR-informed variational regularization model that guides the solution of the imaging inverse problem on the real data manifold. Leveraging its inherent convexity, we have established the convergence of the projected subgradient descent algorithm for the CLEAR-informed regularization model. This convergence guarantees the attainment of a unique solution to the imaging inverse problem, subject to certain assumptions. Furthermore, we have demonstrated the robustness of our CLEAR-informed model, explicitly showcasing its capacity to achieve stable reconstruction even in the presence of measurement interference. Finally, we illustrate the superiority of our approach using MRI reconstruction as an example. Our method consistently outperforms conventional data-driven techniques and traditional regularization approaches, excelling in both reconstruction quality and robustness.