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Active learning using adaptable task-based prioritisation


Dec 03, 2022
Shaheer U. Saeed, João Ramalhinho, Mark Pinnock, Ziyi Shen, Yunguan Fu, Nina Montaña-Brown, Ester Bonmati, Dean C. Barratt, Stephen P. Pereira, Brian Davidson, Matthew J. Clarkson, Yipeng Hu

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MONAI: An open-source framework for deep learning in healthcare


Nov 04, 2022
M. Jorge Cardoso, Wenqi Li, Richard Brown, Nic Ma, Eric Kerfoot, Yiheng Wang, Benjamin Murrey, Andriy Myronenko, Can Zhao, Dong Yang, Vishwesh Nath, Yufan He, Ziyue Xu, Ali Hatamizadeh, Andriy Myronenko, Wentao Zhu, Yun Liu, Mingxin Zheng, Yucheng Tang, Isaac Yang, Michael Zephyr, Behrooz Hashemian, Sachidanand Alle, Mohammad Zalbagi Darestani, Charlie Budd, Marc Modat, Tom Vercauteren, Guotai Wang, Yiwen Li, Yipeng Hu, Yunguan Fu, Benjamin Gorman, Hans Johnson, Brad Genereaux, Barbaros S. Erdal, Vikash Gupta, Andres Diaz-Pinto, Andre Dourson, Lena Maier-Hein, Paul F. Jaeger, Michael Baumgartner, Jayashree Kalpathy-Cramer, Mona Flores, Justin Kirby, Lee A. D. Cooper, Holger R. Roth, Daguang Xu, David Bericat, Ralf Floca, S. Kevin Zhou, Haris Shuaib, Keyvan Farahani, Klaus H. Maier-Hein, Stephen Aylward, Prerna Dogra, Sebastien Ourselin, Andrew Feng

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* www.monai.io 

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Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration


Sep 13, 2022
Yiwen Li, Yunguan Fu, Iani Gayo, Qianye Yang, Zhe Min, Shaheer Saeed, Wen Yan, Yipei Wang, J. Alison Noble, Mark Emberton, Matthew J. Clarkson, Henkjan Huisman, Dean Barratt, Victor Adrian Prisacariu, Yipeng Hu

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Cross-Modality Image Registration using a Training-Time Privileged Third Modality


Jul 26, 2022
Qianye Yang, David Atkinson, Yunguan Fu, Tom Syer, Wen Yan, Shonit Punwani, Matthew J. Clarkson, Dean C. Barratt, Tom Vercauteren, Yipeng Hu

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* Accepted by IEEE Transactions on Medical Imaging (TMI, 2022) 

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Image quality assessment for machine learning tasks using meta-reinforcement learning


Mar 27, 2022
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu

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* Medical Image Analysis, Volume 78, 2022, 102427, ISSN 1361-8415 
* Accepted to Medical Image Analysis; Final published version available at: https://doi.org/10.1016/j.media.2022.102427 

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Image quality assessment by overlapping task-specific and task-agnostic measures: application to prostate multiparametric MR images for cancer segmentation


Feb 20, 2022
Shaheer U. Saeed, Wen Yan, Yunguan Fu, Francesco Giganti, Qianye Yang, Zachary M. C. Baum, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, Mark Emberton, Dean C. Barratt, Yipeng Hu

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* Accepted for publication at the Journal of Machine Learning for Biomedical Imaging (MELBA) https://www.melba-journal.org 

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Few-shot image segmentation for cross-institution male pelvic organs using registration-assisted prototypical learning


Jan 17, 2022
Yiwen Li, Yunguan Fu, Qianye Yang, Zhe Min, Wen Yan, Henkjan Huisman, Dean Barratt, Victor Adrian Prisacariu, Yipeng Hu

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* To appear in the proceedings of the IEEE International Symposium on Biomedical Imaging (ISBI) 2022 

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Few-shot Semantic Segmentation with Self-supervision from Pseudo-classes


Oct 22, 2021
Yiwen Li, Gratianus Wesley Putra Data, Yunguan Fu, Yipeng Hu, Victor Adrian Prisacariu

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* To appear in the proceedings of the British Machine Vision Conference (BMVC) 2021 

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Adaptable image quality assessment using meta-reinforcement learning of task amenability


Jul 31, 2021
Shaheer U. Saeed, Yunguan Fu, Vasilis Stavrinides, Zachary M. C. Baum, Qianye Yang, Mirabela Rusu, Richard E. Fan, Geoffrey A. Sonn, J. Alison Noble, Dean C. Barratt, Yipeng Hu

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* Accepted at ASMUS 2021 (The 2nd International Workshop of Advances in Simplifying Medical UltraSound) 

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