What Papers Don't Tell You: Recovering Tacit Knowledge for Automated Paper Reproduction

Automated paper reproduction -- generating executable code from academic papers -- is bottlenecked not by information retrieval but by the tacit knowledge that papers inevitably leave implicit. We formalize this challenge as the progressive recovery of three types of tacit knowledge -- relational, somatic, and collective -- and propose \method, a graph-based agent framework with a dedicated mechanism for each: node-level relation-aware aggregation recovers relational knowledge by analyzing implementation-unit-level reuse and adaptation relationships between the target paper and its citation neighbors; execution-feedback refinement recovers somatic knowledge through iterative debugging driven by runtime signals; and graph-level knowledge induction distills collective knowledge from clusters of papers sharing similar implementations. On an extended ReproduceBench spanning 3 domains, 10 tasks, and 40 recent papers, \method{} achieves an average performance gap of 10.04\% against official implementations, improving over the strongest baseline by 24.68\%. The code will be publicly released upon acceptance; the repository link will be provided in the final version.

What Should I Cite? A RAG Benchmark for Academic Citation Prediction

With the rapid growth of Web-based academic publications, more and more papers are being published annually, making it increasingly difficult to find relevant prior work. Citation prediction aims to automatically suggest appropriate references, helping scholars navigate the expanding scientific literature. Here we present \textbf{CiteRAG}, the first comprehensive retrieval-augmented generation (RAG)-integrated benchmark for evaluating large language models on academic citation prediction, featuring a multi-level retrieval strategy, specialized retrievers, and generators. Our benchmark makes four core contributions: (1) We establish two instances of the citation prediction task with different granularity. Task 1 focuses on coarse-grained list-specific citation prediction, while Task 2 targets fine-grained position-specific citation prediction. To enhance these two tasks, we build a dataset containing 7,267 instances for Task 1 and 8,541 instances for Task 2, enabling comprehensive evaluation of both retrieval and generation. (2) We construct a three-level large-scale corpus with 554k papers spanning many major subfields, using an incremental pipeline. (3) We propose a multi-level hybrid RAG approach for citation prediction, fine-tuning embedding models with contrastive learning to capture complex citation relationships, paired with specialized generation models. (4) We conduct extensive experiments across state-of-the-art language models, including closed-source APIs, open-source models, and our fine-tuned generators, demonstrating the effectiveness of our framework. Our open-source toolkit enables reproducible evaluation and focuses on academic literature, providing the first comprehensive evaluation framework for citation prediction and serving as a methodological template for other scientific domains. Our source code and data are released at https://github.com/LQgdwind/CiteRAG.