Accelerating Sampling and Aggregation Operations in GNN Frameworks with GPU Initiated Direct Storage Accesses

Graph Neural Networks (GNNs) are emerging as a powerful tool for learning from graph-structured data and performing sophisticated inference tasks in various application domains. Although GNNs have been shown to be effective on modest-sized graphs, training them on large-scale graphs remains a significant challenge due to lack of efficient data access and data movement methods. Existing frameworks for training GNNs use CPUs for graph sampling and feature aggregation, while the training and updating of model weights are executed on GPUs. However, our in-depth profiling shows the CPUs cannot achieve the throughput required to saturate GNN model training throughput, causing gross under-utilization of expensive GPU resources. Furthermore, when the graph and its embeddings do not fit in the CPU memory, the overhead introduced by the operating system, say for handling page-faults, comes in the critical path of execution. To address these issues, we propose the GPU Initiated Direct Storage Access (GIDS) dataloader, to enable GPU-oriented GNN training for large-scale graphs while efficiently utilizing all hardware resources, such as CPU memory, storage, and GPU memory with a hybrid data placement strategy. By enabling GPU threads to fetch feature vectors directly from storage, GIDS dataloader solves the memory capacity problem for GPU-oriented GNN training. Moreover, GIDS dataloader leverages GPU parallelism to tolerate storage latency and eliminates expensive page-fault overhead. Doing so enables us to design novel optimizations for exploiting locality and increasing effective bandwidth for GNN training. Our evaluation using a single GPU on terabyte-scale GNN datasets shows that GIDS dataloader accelerates the overall DGL GNN training pipeline by up to 392X when compared to the current, state-of-the-art DGL dataloader.

IGB: Addressing The Gaps In Labeling, Features, Heterogeneity, and Size of Public Graph Datasets for Deep Learning Research

Graph neural networks (GNNs) have shown high potential for a variety of real-world, challenging applications, but one of the major obstacles in GNN research is the lack of large-scale flexible datasets. Most existing public datasets for GNNs are relatively small, which limits the ability of GNNs to generalize to unseen data. The few existing large-scale graph datasets provide very limited labeled data. This makes it difficult to determine if the GNN model's low accuracy for unseen data is inherently due to insufficient training data or if the model failed to generalize. Additionally, datasets used to train GNNs need to offer flexibility to enable a thorough study of the impact of various factors while training GNN models. In this work, we introduce the Illinois Graph Benchmark (IGB), a research dataset tool that the developers can use to train, scrutinize and systematically evaluate GNN models with high fidelity. IGB includes both homogeneous and heterogeneous graphs of enormous sizes, with more than 40% of their nodes labeled. Compared to the largest graph datasets publicly available, the IGB provides over 162X more labeled data for deep learning practitioners and developers to create and evaluate models with higher accuracy. The IGB dataset is designed to be flexible, enabling the study of various GNN architectures, embedding generation techniques, and analyzing system performance issues. IGB is open-sourced, supports DGL and PyG frameworks, and comes with releases of the raw text that we believe foster emerging language models and GNN research projects. An early public version of IGB is available at https://github.com/IllinoisGraphBenchmark/IGB-Datasets.

PIGEON: Optimizing CUDA Code Generator for End-to-End Training and Inference of Relational Graph Neural Networks

Relational graph neural networks (RGNNs) are graph neural networks (GNNs) with dedicated structures for modeling the different types of nodes and/or edges in heterogeneous graphs. While RGNNs have been increasingly adopted in many real-world applications due to their versatility and accuracy, they pose performance and system design challenges due to their inherent computation patterns, gap between the programming interface and kernel APIs, and heavy programming efforts in optimizing kernels caused by their coupling with data layout and heterogeneity. To systematically address these challenges, we propose Pigeon, a novel two-level intermediate representation (IR) and its code generator framework, that (a) represents the key properties of the RGNN models to bridge the gap between the programming interface and kernel APIs, (b) decouples model semantics, data layout, and operators-specific optimization from each other to reduce programming efforts, (c) expresses and leverages optimization opportunities in inter-operator transforms, data layout, and operator-specific schedules. By building on one general matrix multiply (GEMM) template and a node/edge traversal template, Pigeon achieves up to 7.8x speed-up in inference and 5.6x speed-up in training compared with the state-of-the-art public systems in select models, i.e., RGCN, RGAT, HGT, when running heterogeneous graphs provided by Deep Graph Library (DGL) and Open Graph Benchmark (OGB). Pigeon also triggers fewer out-of-memory (OOM) errors. In addition, we propose linear operator fusion and compact materialization to further accelerate the system by up to 2.2x.

Submission-Aware Reviewer Profiling for Reviewer Recommender System

Assigning qualified, unbiased and interested reviewers to paper submissions is vital for maintaining the integrity and quality of the academic publishing system and providing valuable reviews to authors. However, matching thousands of submissions with thousands of potential reviewers within a limited time is a daunting challenge for a conference program committee. Prior efforts based on topic modeling have suffered from losing the specific context that help define the topics in a publication or submission abstract. Moreover, in some cases, topics identified are difficult to interpret. We propose an approach that learns from each abstract published by a potential reviewer the topics studied and the explicit context in which the reviewer studied the topics. Furthermore, we contribute a new dataset for evaluating reviewer matching systems. Our experiments show a significant, consistent improvement in precision when compared with the existing methods. We also use examples to demonstrate why our recommendations are more explainable. The new approach has been deployed successfully at top-tier conferences in the last two years.

Can Language Models Be Specific? How?

A good speaker not only needs to be correct, but also has the ability to be specific when desired, and so are language models. In this paper, we propose to measure how specific the language of pre-trained language models (PLMs) is. To achieve this, we introduce a novel approach to build a benchmark for specificity testing by forming masked token prediction tasks with prompts. For instance, given ``J. K. Rowling was born in [MASK].'', we want to test whether a more specific answer will be better filled in by PLMs, e.g., Yate instead of England. From our evaluations, we show that existing PLMs have only a slight preference for more specific answers. We identify underlying factors affecting the specificity and design two prompt-based methods to improve the specificity. Results show that the specificity of the models can be improved by the proposed methods without additional training. We believe this work can provide new insights for language modeling and encourage the research community to further explore this important but understudied problem.

DKG: A Descriptive Knowledge Graph for Explaining Relationships between Entities

In this paper, we propose Descriptive Knowledge Graph (DKG) - an open and interpretable form of modeling relationships between entities. In DKGs, relationships between entities are represented by relation descriptions. For instance, the relationship between entities of machine learning and algorithm can be described as "Machine learning explores the study and construction of algorithms that can learn from and make predictions on data." To construct DKGs, we propose a self-supervised learning method to extract relation descriptions with the analysis of dependency patterns and a transformer-based relation description synthesizing model to generate relation descriptions. Experiments demonstrate that our system can extract and generate high-quality relation descriptions for explaining entity relationships.

Graph Neural Network Training with Data Tiering

Graph Neural Networks (GNNs) have shown success in learning from graph-structured data, with applications to fraud detection, recommendation, and knowledge graph reasoning. However, training GNN efficiently is challenging because: 1) GPU memory capacity is limited and can be insufficient for large datasets, and 2) the graph-based data structure causes irregular data access patterns. In this work, we provide a method to statistical analyze and identify more frequently accessed data ahead of GNN training. Our data tiering method not only utilizes the structure of input graph, but also an insight gained from actual GNN training process to achieve a higher prediction result. With our data tiering method, we additionally provide a new data placement and access strategy to further minimize the CPU-GPU communication overhead. We also take into account of multi-GPU GNN training as well and we demonstrate the effectiveness of our strategy in a multi-GPU system. The evaluation results show that our work reduces CPU-GPU traffic by 87-95% and improves the training speed of GNN over the existing solutions by 1.6-2.1x on graphs with hundreds of millions of nodes and billions of edges.

MLHarness: A Scalable Benchmarking System for MLCommons

With the society's growing adoption of machine learning (ML) and deep learning (DL) for various intelligent solutions, it becomes increasingly imperative to standardize a common set of measures for ML/DL models with large scale open datasets under common development practices and resources so that people can benchmark and compare models quality and performance on a common ground. MLCommons has emerged recently as a driving force from both industry and academia to orchestrate such an effort. Despite its wide adoption as standardized benchmarks, MLCommons Inference has only included a limited number of ML/DL models (in fact seven models in total). This significantly limits the generality of MLCommons Inference's benchmarking results because there are many more novel ML/DL models from the research community, solving a wide range of problems with different inputs and outputs modalities. To address such a limitation, we propose MLHarness, a scalable benchmarking harness system for MLCommons Inference with three distinctive features: (1) it codifies the standard benchmark process as defined by MLCommons Inference including the models, datasets, DL frameworks, and software and hardware systems; (2) it provides an easy and declarative approach for model developers to contribute their models and datasets to MLCommons Inference; and (3) it includes the support of a wide range of models with varying inputs/outputs modalities so that we can scalably benchmark these models across different datasets, frameworks, and hardware systems. This harness system is developed on top of the MLModelScope system, and will be open sourced to the community. Our experimental results demonstrate the superior flexibility and scalability of this harness system for MLCommons Inference benchmarking.

Open Relation Modeling: Learning to Define Relations between Entities

Relations between entities can be represented by different instances, e.g., a sentence containing both entities or a fact in a Knowledge Graph (KG). However, these instances may not well capture the general relations between entities, may be difficult to understand by humans, even may not be found due to the incompleteness of the knowledge source. In this paper, we introduce the Open Relation Modeling task - given two entities, generate a coherent sentence describing the relation between them. To solve this task, we propose to teach machines to generate definition-like relation descriptions by letting them learn from definitions of entities. Specifically, we fine-tune Pre-trained Language Models (PLMs) to produce definitions conditioned on extracted entity pairs. To help PLMs reason between entities and provide additional relational knowledge to PLMs for open relation modeling, we incorporate reasoning paths in KGs and include a reasoning path selection mechanism. We show that PLMs can select interpretable and informative reasoning paths by confidence estimation, and the selected path can guide PLMs to generate better relation descriptions. Experimental results show that our model can generate concise but informative relation descriptions that capture the representative characteristics of entities and relations.

Measuring Fine-Grained Domain Relevance of Terms: A Hierarchical Core-Fringe Approach

We propose to measure fine-grained domain relevance - the degree that a term is relevant to a broad (e.g., computer science) or narrow (e.g., deep learning) domain. Such measurement is crucial for many downstream tasks in natural language processing. To handle long-tail terms, we build a core-anchored semantic graph, which uses core terms with rich description information to bridge the vast remaining fringe terms semantically. To support a fine-grained domain without relying on a matching corpus for supervision, we develop hierarchical core-fringe learning, which learns core and fringe terms jointly in a semi-supervised manner contextualized in the hierarchy of the domain. To reduce expensive human efforts, we employ automatic annotation and hierarchical positive-unlabeled learning. Our approach applies to big or small domains, covers head or tail terms, and requires little human effort. Extensive experiments demonstrate that our methods outperform strong baselines and even surpass professional human performance.