GPN: A Joint Structural Learning Framework for Graph Neural Networks

Graph neural networks (GNNs) have been applied into a variety of graph tasks. Most existing work of GNNs is based on the assumption that the given graph data is optimal, while it is inevitable that there exists missing or incomplete edges in the graph data for training, leading to degraded performance. In this paper, we propose Generative Predictive Network (GPN), a GNN-based joint learning framework that simultaneously learns the graph structure and the downstream task. Specifically, we develop a bilevel optimization framework for this joint learning task, in which the upper optimization (generator) and the lower optimization (predictor) are both instantiated with GNNs. To the best of our knowledge, our method is the first GNN-based bilevel optimization framework for resolving this task. Through extensive experiments, our method outperforms a wide range of baselines using benchmark datasets.

RetroXpert: Decompose Retrosynthesis Prediction like a Chemist

Retrosynthesis is the process of recursively decomposing target molecules into available building blocks. It plays an important role in solving problems in organic synthesis planning. To automate or assist in the retrosynthesis analysis, various retrosynthesis prediction algorithms have been proposed. However, most of them are cumbersome and lack interpretability about their predictions. In this paper, we devise a novel template-free algorithm for automatic retrosynthetic expansion inspired by how chemists approach retrosynthesis prediction. Our method disassembles retrosynthesis into two steps: i) identify the potential reaction center of the target molecule through a novel graph neural network and generate intermediate synthons, and ii) generate the reactants associated with synthons via a robust reactant generation model. While outperforming the state-of-the-art baselines by a significant margin, our model also provides chemically reasonable interpretation.

Adaptive Regularization of Labels

Recently, a variety of regularization techniques have been widely applied in deep neural networks, such as dropout, batch normalization, data augmentation, and so on. These methods mainly focus on the regularization of weight parameters to prevent overfitting effectively. In addition, label regularization techniques such as label smoothing and label disturbance have also been proposed with the motivation of adding a stochastic perturbation to labels. In this paper, we propose a novel adaptive label regularization method, which enables the neural network to learn from the erroneous experience and update the optimal label representation online. On the other hand, compared with knowledge distillation, which learns the correlation of categories using teacher network, our proposed method requires only a minuscule increase in parameters without cumbersome teacher network. Furthermore, we evaluate our method on CIFAR-10/CIFAR-100/ImageNet datasets for image recognition tasks and AGNews/Yahoo/Yelp-Full datasets for text classification tasks. The empirical results show significant improvement under all experimental settings.