Gene Ontology-Guided Hierarchical Spatial Gene Expression Prediction from Histopathology Images

Predicting spatial gene expression from histopathology images enables large-scale transcriptomic profiling without the cost of direct measurement. Existing methods decode the target gene set as a flat, unstructured vector, ignoring the inter-gene dependencies arising from shared biological pathways and regulatory programs. Without explicit structural guidance, models must infer these dependencies entirely from limited paired data, constraining prediction quality. We propose MSGR (Multi-Scale Gene Refiner), which bridges this gap by incorporating the Gene Ontology (GO), a curated functional hierarchy of genes, as an explicit structural prior. MSGR organizes target genes into a four-level GO tree. Its GO-guided decoder then progressively refines predictions from coarse functional domains to fine individual genes via residual corrections under scale-weighted supervision. Operating solely on the gene side, the GO-guided decoder serves as a seamless plug-in replacement that consistently improves existing architectures without requiring any image-side modifications. Extensive experiments on nine datasets from the HEST-1k benchmark provide empirical evidence for two central claims: GO-structured decoding consistently outperforms flat decoding, even against a state-of-the-art generative baseline, and the gain is attributable to biological ontology structure rather than hierarchical decomposition per se, as confirmed by a +0.027 margin over a structurally equivalent random hierarchy.

Partial Fairness Awareness: Belief-Guided Strategic Mechanism for Strategic Agents

Strategic machine learning investigates scenarios where agents manipulate their features to receive favorable decisions from predictive models. To address fairness concerns intrinsic to strategic classification, recent work has introduced group-specific fairness constraints. However, current fairness-aware approaches face a fundamental dilemma in the issue of fairness exposure: making these constraints public enables strategic manipulation and can lead to fairness reversal, while keeping them hidden may reduce social welfare and discourage genuine improvement. To fill this gap, we subsequently propose the problem of partial fairness awareness (PFA), as our theoretical analysis informs that such a dilemma can be mitigated by releasing the candidate set of fairness constraints and concealing the grounding constraint. To be specific, we introduce a belief-guided strategic mechanism, wherein agents iteratively interact with the decision system and maintain a belief distribution over the candidate set of fairness constraints. This belief-guided process enables agents, through iterative interaction and feedback, to update their belief distribution over the candidate set, thereby gradually aligning their belief with the grounding fairness constraint employed by the system. Extensive experiments on real-world and synthetic datasets demonstrate that PFA achieves lower group fairness gaps, higher acceptance of truly qualified individuals, and more stable outcomes compared to fully public or private fairness regimes.

Beyond Independent Genes: Learning Module-Inductive Representations for Gene Perturbation Prediction

Predicting transcriptional responses to genetic perturbations is a central problem in functional genomics. In practice, perturbation responses are rarely gene-independent but instead manifest as coordinated, program-level transcriptional changes among functionally related genes. However, most existing methods do not explicitly model such coordination, due to gene-wise modeling paradigms and reliance on static biological priors that cannot capture dynamic program reorganization. To address these limitations, we propose scBIG, a module-inductive perturbation prediction framework that explicitly models coordinated gene programs. scBIG induces coherent gene programs from data via Gene-Relation Clustering, captures inter-program interactions through a Gene-Cluster-Aware Encoder, and preserves modular coordination using structure-aware alignment objectives. These structured representations are then modeled using conditional flow matching to enable flexible and generalizable perturbation prediction. Extensive experiments on multiple single-cell perturbation benchmarks show that scBIG consistently outperforms state-of-the-art methods, particularly on unseen and combinatorial perturbation settings, achieving an average improvement of 6.7% over the strongest baselines.

Towards Radar Emitter Recognition in Changing Environments with Domain Generalization

Analyzing radar signals from complex Electronic Warfare (EW) environment is a non-trivial task.However, in the real world, the changing EW environment results in inconsistent signal distribution, such as the pulse repetition interval (PRI) mismatch between different detected scenes.In this paper, we propose a novel domain generalization framework to improve the adaptability of signal recognition in changing environments.Specifically, we first design several noise generators to simulate varied scenes. Different from conventional augmentation methods, our introduced generators carefully enhance the diversity of the detected signals and meanwhile maintain the semantic features of the signals. Moreover, we propose a signal scene domain classifier that works in the manner of adversarial learning. The proposed classifier guarantees the signal predictor to generalize to different scenes. Extensive comparative experiments prove the proposed method's superiority.