Bayesian-Agent: Posterior-Guided Skill Evolution for LLM Agent Harnesses

LLM agents increasingly rely on external inference conditions: prompts, tools, memory, SOPs, skills, and harness feedback. These assets can improve task execution without changing model weights, but they are often revised by heuristic reflection or by reusing observed successes and failures as if counts alone were reliable belief. We introduce \textbf{Bayesian-Agent}, a native and cross-harness framework that treats reusable skills and SOPs as hypotheses about whether a frozen model will succeed under a particular prompt, context, and harness environment. Bayesian-Agent records verified trajectory evidence, maintains a feature-conditioned categorical posterior over each skill, and maps posterior state into inspectable actions such as patch, split, compress, retire, and explore. Model-facing prompts receive executable guardrails and failure-mode patches, while posterior summaries remain available for audit. With \texttt{deepseek-v4-flash}, incremental repair improves SOP-Bench from 80\% to 95\%, Lifelong AgentBench from 90\% to 100\%, and RealFin-Bench from 45\% to 65\%. We further evaluate Bayesian-Agent's native backend and optional GenericAgent, mini-swe-agent, and Claude Code backends. The results include positive, negative, saturated, and case-study settings, suggesting that agent skill evolution is best viewed as posterior-guided harness optimization rather than uncalibrated prompt accumulation. The source code is available at https://github.com/DataArcTech/Bayesian-Agent.

Conflicts Make Large Reasoning Models Vulnerable to Attacks

Large Reasoning Models (LRMs) have achieved remarkable performance across diverse domains, yet their decision-making under conflicting objectives remains insufficiently understood. This work investigates how LRMs respond to harmful queries when confronted with two categories of conflicts: internal conflicts that pit alignment values against each other and dilemmas, which impose mutually contradictory choices, including sacrificial, duress, agent-centered, and social forms. Using over 1,300 prompts across five benchmarks, we evaluate three representative LRMs - Llama-3.1-Nemotron-8B, QwQ-32B, and DeepSeek R1 - and find that conflicts significantly increase attack success rates, even under single-round non-narrative queries without sophisticated auto-attack techniques. Our findings reveal through layerwise and neuron-level analyses that safety-related and functional representations shift and overlap under conflict, interfering with safety-aligned behavior. This study highlights the need for deeper alignment strategies to ensure the robustness and trustworthiness of next-generation reasoning models. Our code is available at https://github.com/DataArcTech/ConflictHarm. Warning: This paper contains inappropriate, offensive and harmful content.

Continual Pretraining on Encrypted Synthetic Data for Privacy-Preserving LLMs

Preserving privacy in sensitive data while pretraining large language models on small, domain-specific corpora presents a significant challenge. In this work, we take an exploratory step toward privacy-preserving continual pretraining by proposing an entity-based framework that synthesizes encrypted training data to protect personally identifiable information (PII). Our approach constructs a weighted entity graph to guide data synthesis and applies deterministic encryption to PII entities, enabling LLMs to encode new knowledge through continual pretraining while granting authorized access to sensitive data through decryption keys. Our results on limited-scale datasets demonstrate that our pretrained models outperform base models and ensure PII security, while exhibiting a modest performance gap compared to models trained on unencrypted synthetic data. We further show that increasing the number of entities and leveraging graph-based synthesis improves model performance, and that encrypted models retain instruction-following capabilities with long retrieved contexts. We discuss the security implications and limitations of deterministic encryption, positioning this work as an initial investigation into the design space of encrypted data pretraining for privacy-preserving LLMs. Our code is available at https://github.com/DataArcTech/SoE.

RETuning: Upgrading Inference-Time Scaling for Stock Movement Prediction with Large Language Models

Recently, large language models (LLMs) have demonstrated outstanding reasoning capabilities on mathematical and coding tasks. However, their application to financial tasks-especially the most fundamental task of stock movement prediction-remains underexplored. We study a three-class classification problem (up, hold, down) and, by analyzing existing reasoning responses, observe that: (1) LLMs follow analysts' opinions rather than exhibit a systematic, independent analytical logic (CoTs). (2) LLMs list summaries from different sources without weighing adversarial evidence, yet such counterevidence is crucial for reliable prediction. It shows that the model does not make good use of its reasoning ability to complete the task. To address this, we propose Reflective Evidence Tuning (RETuning), a cold-start method prior to reinforcement learning, to enhance prediction ability. While generating CoT, RETuning encourages dynamically constructing an analytical framework from diverse information sources, organizing and scoring evidence for price up or down based on that framework-rather than on contextual viewpoints-and finally reflecting to derive the prediction. This approach maximally aligns the model with its learned analytical framework, ensuring independent logical reasoning and reducing undue influence from context. We also build a large-scale dataset spanning all of 2024 for 5,123 A-share stocks, with long contexts (32K tokens) and over 200K samples. In addition to price and news, it incorporates analysts' opinions, quantitative reports, fundamental data, macroeconomic indicators, and similar stocks. Experiments show that RETuning successfully unlocks the model's reasoning ability in the financial domain. Inference-time scaling still works even after 6 months or on out-of-distribution stocks, since the models gain valuable insights about stock movement prediction.

GraphSearch: An Agentic Deep Searching Workflow for Graph Retrieval-Augmented Generation

Graph Retrieval-Augmented Generation (GraphRAG) enhances factual reasoning in LLMs by structurally modeling knowledge through graph-based representations. However, existing GraphRAG approaches face two core limitations: shallow retrieval that fails to surface all critical evidence, and inefficient utilization of pre-constructed structural graph data, which hinders effective reasoning from complex queries. To address these challenges, we propose \textsc{GraphSearch}, a novel agentic deep searching workflow with dual-channel retrieval for GraphRAG. \textsc{GraphSearch} organizes the retrieval process into a modular framework comprising six modules, enabling multi-turn interactions and iterative reasoning. Furthermore, \textsc{GraphSearch} adopts a dual-channel retrieval strategy that issues semantic queries over chunk-based text data and relational queries over structural graph data, enabling comprehensive utilization of both modalities and their complementary strengths. Experimental results across six multi-hop RAG benchmarks demonstrate that \textsc{GraphSearch} consistently improves answer accuracy and generation quality over the traditional strategy, confirming \textsc{GraphSearch} as a promising direction for advancing graph retrieval-augmented generation.

Select2Reason: Efficient Instruction-Tuning Data Selection for Long-CoT Reasoning

A practical approach to activate long chain-of-thoughts reasoning ability in pre-trained large language models is to perform supervised fine-tuning on instruction datasets synthesized by strong Large Reasoning Models such as DeepSeek-R1, offering a cost-effective alternative to reinforcement learning. However, large-scale instruction sets with more than 100k samples incur significant training overhead, while effective strategies for automatic long-CoT instruction selection still remain unexplored. In this work, we propose Select2Reason, a novel and efficient instruction-tuning data selection framework for long-CoT reasoning. From the perspective of emergence of rethinking behaviors like self-correction and backtracking, we investigate common metrics that may determine the quality of long-CoT reasoning instructions. Select2Reason leverages a quantifier to estimate difficulty of question and jointly incorporates a reasoning trace length-based heuristic through a weighted scheme for ranking to prioritize high-utility examples. Empirical results on OpenR1-Math-220k demonstrate that fine-tuning LLM on only 10% of the data selected by Select2Reason achieves performance competitive with or superior to full-data tuning and open-source baseline OpenR1-Qwen-7B across three competition-level and six comprehensive mathematical benchmarks. Further experiments highlight the scalability in varying data size, efficiency during inference, and its adaptability to other instruction pools with minimal cost.

Synthesize-on-Graph: Knowledgeable Synthetic Data Generation for Continue Pre-training of Large Language Models

Large Language Models (LLMs) have achieved remarkable success but remain data-inefficient, especially when learning from small, specialized corpora with limited and proprietary data. Existing synthetic data generation methods for continue pre-training focus on intra-document content and overlook cross-document knowledge associations, limiting content diversity and depth. We propose Synthetic-on-Graph (SoG), a synthetic data generation framework that incorporates cross-document knowledge associations for efficient corpus expansion. SoG constructs a context graph by extracting entities and concepts from the original corpus, representing cross-document associations, and employing a graph walk strategy for knowledge-associated sampling. This enhances synthetic data diversity and coherence, enabling models to learn complex knowledge structures and handle rare knowledge. To further improve synthetic data quality, we integrate Chain-of-Thought (CoT) and Contrastive Clarifying (CC) synthetic, enhancing reasoning processes and discriminative power. Experiments show that SoG outperforms the state-of-the-art (SOTA) method in a multi-hop document Q&A dataset while performing comparably to the SOTA method on the reading comprehension task datasets, which also underscores the better generalization capability of SoG. Our work advances synthetic data generation and provides practical solutions for efficient knowledge acquisition in LLMs, especially in domains with limited data availability.

LongFaith: Enhancing Long-Context Reasoning in LLMs with Faithful Synthetic Data

Despite the growing development of long-context large language models (LLMs), data-centric approaches relying on synthetic data have been hindered by issues related to faithfulness, which limit their effectiveness in enhancing model performance on tasks such as long-context reasoning and question answering (QA). These challenges are often exacerbated by misinformation caused by lack of verification, reasoning without attribution, and potential knowledge conflicts. We propose LongFaith, a novel pipeline for synthesizing faithful long-context reasoning instruction datasets. By integrating ground truth and citation-based reasoning prompts, we eliminate distractions and improve the accuracy of reasoning chains, thus mitigating the need for costly verification processes. We open-source two synthesized datasets, LongFaith-SFT and LongFaith-PO, which systematically address multiple dimensions of faithfulness, including verified reasoning, attribution, and contextual grounding. Extensive experiments on multi-hop reasoning datasets and LongBench demonstrate that models fine-tuned on these datasets significantly improve performance. Our ablation studies highlight the scalability and adaptability of the LongFaith pipeline, showcasing its broad applicability in developing long-context LLMs.

Retrieval, Reasoning, Re-ranking: A Context-Enriched Framework for Knowledge Graph Completion

The Knowledge Graph Completion~(KGC) task aims to infer the missing entity from an incomplete triple. Existing embedding-based methods rely solely on triples in the KG, which is vulnerable to specious relation patterns and long-tail entities. On the other hand, text-based methods struggle with the semantic gap between KG triples and natural language. Apart from triples, entity contexts (e.g., labels, descriptions, aliases) also play a significant role in augmenting KGs. To address these limitations, we propose KGR3, a context-enriched framework for KGC. KGR3 is composed of three modules. Firstly, the Retrieval module gathers supporting triples from the KG, collects plausible candidate answers from a base embedding model, and retrieves context for each related entity. Then, the Reasoning module employs a large language model to generate potential answers for each query triple. Finally, the Re-ranking module combines candidate answers from the two modules mentioned above, and fine-tunes an LLM to provide the best answer. Extensive experiments on widely used datasets demonstrate that KGR3 consistently improves various KGC methods. Specifically, the best variant of KGR3 achieves absolute Hits@1 improvements of 12.3% and 5.6% on the FB15k237 and WN18RR datasets.

Context-aware Inductive Knowledge Graph Completion with Latent Type Constraints and Subgraph Reasoning

Inductive knowledge graph completion (KGC) aims to predict missing triples with unseen entities. Recent works focus on modeling reasoning paths between the head and tail entity as direct supporting evidence. However, these methods depend heavily on the existence and quality of reasoning paths, which limits their general applicability in different scenarios. In addition, we observe that latent type constraints and neighboring facts inherent in KGs are also vital in inferring missing triples. To effectively utilize all useful information in KGs, we introduce CATS, a novel context-aware inductive KGC solution. With sufficient guidance from proper prompts and supervised fine-tuning, CATS activates the strong semantic understanding and reasoning capabilities of large language models to assess the existence of query triples, which consist of two modules. First, the type-aware reasoning module evaluates whether the candidate entity matches the latent entity type as required by the query relation. Then, the subgraph reasoning module selects relevant reasoning paths and neighboring facts, and evaluates their correlation to the query triple. Experiment results on three widely used datasets demonstrate that CATS significantly outperforms state-of-the-art methods in 16 out of 18 transductive, inductive, and few-shot settings with an average absolute MRR improvement of 7.2%.