PaperQA: Retrieval-Augmented Generative Agent for Scientific Research

Large Language Models (LLMs) generalize well across language tasks, but suffer from hallucinations and uninterpretability, making it difficult to assess their accuracy without ground-truth. Retrieval-Augmented Generation (RAG) models have been proposed to reduce hallucinations and provide provenance for how an answer was generated. Applying such models to the scientific literature may enable large-scale, systematic processing of scientific knowledge. We present PaperQA, a RAG agent for answering questions over the scientific literature. PaperQA is an agent that performs information retrieval across full-text scientific articles, assesses the relevance of sources and passages, and uses RAG to provide answers. Viewing this agent as a question answering model, we find it exceeds performance of existing LLMs and LLM agents on current science QA benchmarks. To push the field closer to how humans perform research on scientific literature, we also introduce LitQA, a more complex benchmark that requires retrieval and synthesis of information from full-text scientific papers across the literature. Finally, we demonstrate PaperQA's matches expert human researchers on LitQA.

BioPlanner: Automatic Evaluation of LLMs on Protocol Planning in Biology

The ability to automatically generate accurate protocols for scientific experiments would represent a major step towards the automation of science. Large Language Models (LLMs) have impressive capabilities on a wide range of tasks, such as question answering and the generation of coherent text and code. However, LLMs can struggle with multi-step problems and long-term planning, which are crucial for designing scientific experiments. Moreover, evaluation of the accuracy of scientific protocols is challenging, because experiments can be described correctly in many different ways, require expert knowledge to evaluate, and cannot usually be executed automatically. Here we present an automatic evaluation framework for the task of planning experimental protocols, and we introduce BioProt: a dataset of biology protocols with corresponding pseudocode representations. To measure performance on generating scientific protocols, we use an LLM to convert a natural language protocol into pseudocode, and then evaluate an LLM's ability to reconstruct the pseudocode from a high-level description and a list of admissible pseudocode functions. We evaluate GPT-3 and GPT-4 on this task and explore their robustness. We externally validate the utility of pseudocode representations of text by generating accurate novel protocols using retrieved pseudocode, and we run a generated protocol successfully in our biological laboratory. Our framework is extensible to the evaluation and improvement of language model planning abilities in other areas of science or other areas that lack automatic evaluation.

VisoGender: A dataset for benchmarking gender bias in image-text pronoun resolution

We introduce VisoGender, a novel dataset for benchmarking gender bias in vision-language models. We focus on occupation-related gender biases, inspired by Winograd and Winogender schemas, where each image is associated with a caption containing a pronoun relationship of subjects and objects in the scene. VisoGender is balanced by gender representation in professional roles, supporting bias evaluation in two ways: i) resolution bias, where we evaluate the difference between gender resolution accuracies for men and women and ii) retrieval bias, where we compare ratios of male and female professionals retrieved for a gender-neutral search query. We benchmark several state-of-the-art vision-language models and find that they lack the reasoning abilities to correctly resolve gender in complex scenes. While the direction and magnitude of gender bias depends on the task and the model being evaluated, captioning models generally are more accurate and less biased than CLIP-like models. Dataset and code are available at https://github.com/oxai/visogender

Balancing the Picture: Debiasing Vision-Language Datasets with Synthetic Contrast Sets

Vision-language models are growing in popularity and public visibility to generate, edit, and caption images at scale; but their outputs can perpetuate and amplify societal biases learned during pre-training on uncurated image-text pairs from the internet. Although debiasing methods have been proposed, we argue that these measurements of model bias lack validity due to dataset bias. We demonstrate there are spurious correlations in COCO Captions, the most commonly used dataset for evaluating bias, between background context and the gender of people in-situ. This is problematic because commonly-used bias metrics (such as Bias@K) rely on per-gender base rates. To address this issue, we propose a novel dataset debiasing pipeline to augment the COCO dataset with synthetic, gender-balanced contrast sets, where only the gender of the subject is edited and the background is fixed. However, existing image editing methods have limitations and sometimes produce low-quality images; so, we introduce a method to automatically filter the generated images based on their similarity to real images. Using our balanced synthetic contrast sets, we benchmark bias in multiple CLIP-based models, demonstrating how metrics are skewed by imbalance in the original COCO images. Our results indicate that the proposed approach improves the validity of the evaluation, ultimately contributing to more realistic understanding of bias in vision-language models.

What does CLIP know about a red circle? Visual prompt engineering for VLMs

Large-scale Vision-Language Models, such as CLIP, learn powerful image-text representations that have found numerous applications, from zero-shot classification to text-to-image generation. Despite that, their capabilities for solving novel discriminative tasks via prompting fall behind those of large language models, such as GPT-3. Here we explore the idea of visual prompt engineering for solving computer vision tasks beyond classification by editing in image space instead of text. In particular, we discover an emergent ability of CLIP, where, by simply drawing a red circle around an object, we can direct the model's attention to that region, while also maintaining global information. We show the power of this simple approach by achieving state-of-the-art in zero-shot referring expressions comprehension and strong performance in keypoint localization tasks. Finally, we draw attention to some potential ethical concerns of large language-vision models.

A Prompt Array Keeps the Bias Away: Debiasing Vision-Language Models with Adversarial Learning

Vision-language models can encode societal biases and stereotypes, but there are challenges to measuring and mitigating these harms. Prior proposed bias measurements lack robustness and feature degradation occurs when mitigating bias without access to pretraining data. We address both of these challenges in this paper: First, we evaluate different bias measures and propose the use of retrieval metrics to image-text representations via a bias measuring framework. Second, we investigate debiasing methods and show that optimizing for adversarial loss via learnable token embeddings minimizes various bias measures without substantially degrading feature representations.

Memes in the Wild: Assessing the Generalizability of the Hateful Memes Challenge Dataset

Hateful memes pose a unique challenge for current machine learning systems because their message is derived from both text- and visual-modalities. To this effect, Facebook released the Hateful Memes Challenge, a dataset of memes with pre-extracted text captions, but it is unclear whether these synthetic examples generalize to `memes in the wild'. In this paper, we collect hateful and non-hateful memes from Pinterest to evaluate out-of-sample performance on models pre-trained on the Facebook dataset. We find that memes in the wild differ in two key aspects: 1) Captions must be extracted via OCR, injecting noise and diminishing performance of multimodal models, and 2) Memes are more diverse than `traditional memes', including screenshots of conversations or text on a plain background. This paper thus serves as a reality check for the current benchmark of hateful meme detection and its applicability for detecting real world hate.

Privacy-preserving Object Detection

Privacy considerations and bias in datasets are quickly becoming high-priority issues that the computer vision community needs to face. So far, little attention has been given to practical solutions that do not involve collection of new datasets. In this work, we show that for object detection on COCO, both anonymizing the dataset by blurring faces, as well as swapping faces in a balanced manner along the gender and skin tone dimension, can retain object detection performances while preserving privacy and partially balancing bias.

How True is GPT-2? An Empirical Analysis of Intersectional Occupational Biases

The capabilities of natural language models trained on large-scale data have increased immensely over the past few years. Downstream applications are at risk of inheriting biases contained in these models, with potential negative consequences especially for marginalized groups. In this paper, we analyze the occupational biases of a popular generative language model, GPT-2, intersecting gender with five protected categories: religion, sexuality, ethnicity, political affiliation, and name origin. Using a novel data collection pipeline we collect 396k sentence completions of GPT-2 and find: (i) The machine-predicted jobs are less diverse and more stereotypical for women than for men, especially for intersections; (ii) Fitting 262 logistic models shows intersectional interactions to be highly relevant for occupational associations; (iii) For a given job, GPT-2 reflects the societal skew of gender and ethnicity in the US, and in some cases, pulls the distribution towards gender parity, raising the normative question of what language models _should_ learn.