Accelerating Understanding of Scientific Experiments with End to End Symbolic Regression

We consider the problem of learning free-form symbolic expressions from raw data, such as that produced by an experiment in any scientific domain. Accurate and interpretable models of scientific phenomena are the cornerstone of scientific research. Simple yet interpretable models, such as linear or logistic regression and decision trees often lack predictive accuracy. Alternatively, accurate blackbox models such as deep neural networks provide high predictive accuracy, but do not readily admit human understanding in a way that would enrich the scientific theory of the phenomenon. Many great breakthroughs in science revolve around the development of parsimonious equational models with high predictive accuracy, such as Newton's laws, universal gravitation, and Maxwell's equations. Previous work on automating the search of equational models from data combine domain-specific heuristics as well as computationally expensive techniques, such as genetic programming and Monte-Carlo search. We develop a deep neural network (MACSYMA) to address the symbolic regression problem as an end-to-end supervised learning problem. MACSYMA can generate symbolic expressions that describe a dataset. The computational complexity of the task is reduced to the feedforward computation of a neural network. We train our neural network on a synthetic dataset consisting of data tables of varying length and varying levels of noise, for which the neural network must learn to produce the correct symbolic expression token by token. Finally, we validate our technique by running on a public dataset from behavioral science.

Few-Shot Learning of an Interleaved Text Summarization Model by Pretraining with Synthetic Data

Interleaved texts, where posts belonging to different threads occur in a sequence, commonly occur in online chat posts, so that it can be time-consuming to quickly obtain an overview of the discussions. Existing systems first disentangle the posts by threads and then extract summaries from those threads. A major issue with such systems is error propagation from the disentanglement component. While end-to-end trainable summarization system could obviate explicit disentanglement, such systems require a large amount of labeled data. To address this, we propose to pretrain an end-to-end trainable hierarchical encoder-decoder system using synthetic interleaved texts. We show that by fine-tuning on a real-world meeting dataset (AMI), such a system out-performs a traditional two-step system by 22%. We also compare against transformer models and observed that pretraining with synthetic data both the encoder and decoder outperforms the BertSumExtAbs transformer model which pretrains only the encoder on a large dataset.

Thoracic Disease Identification and Localization using Distance Learning and Region Verification

The identification and localization of diseases in medical images using deep learning models have recently attracted significant interest. Existing methods only consider training the networks with each image independently and most leverage an activation map for disease localization. In this paper, we propose an alternative approach that learns discriminative features among triplets of images and cyclically trains on region features to verify whether attentive regions contain information indicative of a disease. Concretely, we adapt a distance learning framework for multi-label disease classification to differentiate subtle disease features. Additionally, we feed back the features of the predicted class-specific regions to a separate classifier during training to better verify the localized diseases. Our model can achieve state-of-the-art classification performance on the challenging ChestX-ray14 dataset, and our ablation studies indicate that both distance learning and region verification contribute to overall classification performance. Moreover, the distance learning and region verification modules can capture essential information for better localization than baseline models without these modules.

Addressing Data Bias Problems for Chest X-ray Image Report Generation

Automatic medical report generation from chest X-ray images is one possibility for assisting doctors to reduce their workload. However, the different patterns and data distribution of normal and abnormal cases can bias machine learning models. Previous attempts did not focus on isolating the generation of the abnormal and normal sentences in order to increase the variability of generated paragraphs. To address this, we propose to separate abnormal and normal sentence generation by using two different word LSTMs in a hierarchical LSTM model. We conduct an analysis on the distinctiveness of generated sentences compared to the BLEU score, which increases when less distinct reports are generated. We hope our findings will help to encourage the development of new metrics to better verify methods of automatic medical report generation.

Generating Multi-Sentence Abstractive Summaries of Interleaved Texts

In multi-participant postings, as in online chat conversations, several conversations or topic threads may take place concurrently. This leads to difficulties for readers reviewing the postings in not only following discussions but also in quickly identifying their essence. A two-step process, disentanglement of interleaved posts followed by summarization of each thread, addresses the issue, but disentanglement errors are propagated to the summarization step, degrading the overall performance. To address this, we propose an end-to-end trainable encoder-decoder network for summarizing interleaved posts. The interleaved posts are encoded hierarchically, i.e., word-to-word (words in a post) followed by post-to-post (posts in a channel). The decoder also generates summaries hierarchically, thread-to-thread (generate thread representations) followed by word-to-word (i.e., generate summary words). Additionally, we propose a hierarchical attention mechanism for interleaved text. Overall, our end-to-end trainable hierarchical framework enhances performance over a sequence to sequence framework by 8% on a synthetic interleaved texts dataset.

Local Feature Descriptor Learning with Adaptive Siamese Network

Although the recent progress in the deep neural network has led to the development of learnable local feature descriptors, there is no explicit answer for estimation of the necessary size of a neural network. Specifically, the local feature is represented in a low dimensional space, so the neural network should have more compact structure. The small networks required for local feature descriptor learning may be sensitive to initial conditions and learning parameters and more likely to become trapped in local minima. In order to address the above problem, we introduce an adaptive pruning Siamese Architecture based on neuron activation to learn local feature descriptors, making the network more computationally efficient with an improved recognition rate over more complex networks. Our experiments demonstrate that our learned local feature descriptors outperform the state-of-art methods in patch matching.