Multi-institutional Collaborations for Improving Deep Learning-based Magnetic Resonance Image Reconstruction Using Federated Learning

Fast and accurate reconstruction of magnetic resonance (MR) images from under-sampled data is important in many clinical applications. In recent years, deep learning-based methods have been shown to produce superior performance on MR image reconstruction. However, these methods require large amounts of data which is difficult to collect and share due to the high cost of acquisition and medical data privacy regulations. In order to overcome this challenge, we propose a federated learning (FL) based solution in which we take advantage of the MR data available at different institutions while preserving patients' privacy. However, the generalizability of models trained with the FL setting can still be suboptimal due to domain shift, which results from the data collected at multiple institutions with different sensors, disease types, and acquisition protocols, etc. With the motivation of circumventing this challenge, we propose a cross-site modeling for MR image reconstruction in which the learned intermediate latent features among different source sites are aligned with the distribution of the latent features at the target site. Extensive experiments are conducted to provide various insights about FL for MR image reconstruction. Experimental results demonstrate that the proposed framework is a promising direction to utilize multi-institutional data without compromising patients' privacy for achieving improved MR image reconstruction. Our code will be available at https://github.com/guopengf/FLMRCM.

MeGA-CDA: Memory Guided Attention for Category-Aware Unsupervised Domain Adaptive Object Detection

Existing approaches for unsupervised domain adaptive object detection perform feature alignment via adversarial training. While these methods achieve reasonable improvements in performance, they typically perform category-agnostic domain alignment, thereby resulting in negative transfer of features. To overcome this issue, in this work, we attempt to incorporate category information into the domain adaptation process by proposing Memory Guided Attention for Category-Aware Domain Adaptation (MeGA-CDA). The proposed method consists of employing category-wise discriminators to ensure category-aware feature alignment for learning domain-invariant discriminative features. However, since the category information is not available for the target samples, we propose to generate memory-guided category-specific attention maps which are then used to route the features appropriately to the corresponding category discriminator. The proposed method is evaluated on several benchmark datasets and is shown to outperform existing approaches.

Multi-Feature Multi-Scale CNN-Derived COVID-19 Classification from Lung Ultrasound Data

The global pandemic of the novel coronavirus disease 2019 (COVID-19) has put tremendous pressure on the medical system. Imaging plays a complementary role in the management of patients with COVID-19. Computed tomography (CT) and chest X-ray (CXR) are the two dominant screening tools. However, difficulty in eliminating the risk of disease transmission, radiation exposure and not being costeffective are some of the challenges for CT and CXR imaging. This fact induces the implementation of lung ultrasound (LUS) for evaluating COVID-19 due to its practical advantages of noninvasiveness, repeatability, and sensitive bedside property. In this paper, we utilize a deep learning model to perform the classification of COVID-19 from LUS data, which could produce objective diagnostic information for clinicians. Specifically, all LUS images are processed to obtain their corresponding local phase filtered images and radial symmetry transformed images before fed into the multi-scale residual convolutional neural network (CNN). Secondly, image combination as the input of the network is used to explore rich and reliable features. Feature fusion strategy at different levels is adopted to investigate the relationship between the depth of feature aggregation and the classification accuracy. Our proposed method is evaluated on the point-of-care US (POCUS) dataset together with the Italian COVID-19 Lung US database (ICLUS-DB) and shows promising performance for COVID-19 prediction.

Medical Transformer: Gated Axial-Attention for Medical Image Segmentation

Over the past decade, Deep Convolutional Neural Networks have been widely adopted for medical image segmentation and shown to achieve adequate performance. However, due to the inherent inductive biases present in the convolutional architectures, they lack understanding of long-range dependencies in the image. Recently proposed Transformer-based architectures that leverage self-attention mechanism encode long-range dependencies and learn representations that are highly expressive. This motivates us to explore Transformer-based solutions and study the feasibility of using Transformer-based network architectures for medical image segmentation tasks. Majority of existing Transformer-based network architectures proposed for vision applications require large-scale datasets to train properly. However, compared to the datasets for vision applications, for medical imaging the number of data samples is relatively low, making it difficult to efficiently train transformers for medical applications. To this end, we propose a Gated Axial-Attention model which extends the existing architectures by introducing an additional control mechanism in the self-attention module. Furthermore, to train the model effectively on medical images, we propose a Local-Global training strategy (LoGo) which further improves the performance. Specifically, we operate on the whole image and patches to learn global and local features, respectively. The proposed Medical Transformer (MedT) is evaluated on three different medical image segmentation datasets and it is shown that it achieves better performance than the convolutional and other related transformer-based architectures. Code: https://github.com/jeya-maria-jose/Medical-Transformer

Error Diffusion Halftoning Against Adversarial Examples

Adversarial examples contain carefully crafted perturbations that can fool deep neural networks (DNNs) into making wrong predictions. Enhancing the adversarial robustness of DNNs has gained considerable interest in recent years. Although image transformation-based defenses were widely considered at an earlier time, most of them have been defeated by adaptive attacks. In this paper, we propose a new image transformation defense based on error diffusion halftoning, and combine it with adversarial training to defend against adversarial examples. Error diffusion halftoning projects an image into a 1-bit space and diffuses quantization error to neighboring pixels. This process can remove adversarial perturbations from a given image while maintaining acceptable image quality in the meantime in favor of recognition. Experimental results demonstrate that the proposed method is able to improve adversarial robustness even under advanced adaptive attacks, while most of the other image transformation-based defenses do not. We show that a proper image transformation can still be an effective defense approach.

One-Class Classification: A Survey

One-Class Classification (OCC) is a special case of multi-class classification, where data observed during training is from a single positive class. The goal of OCC is to learn a representation and/or a classifier that enables recognition of positively labeled queries during inference. This topic has received considerable amount of interest in the computer vision, machine learning and biometrics communities in recent years. In this article, we provide a survey of classical statistical and recent deep learning-based OCC methods for visual recognition. We discuss the merits and drawbacks of existing OCC approaches and identify promising avenues for research in this field. In addition, we present a discussion of commonly used datasets and evaluation metrics for OCC.

A Large-Scale, Time-Synchronized Visible and Thermal Face Dataset

Thermal face imagery, which captures the naturally emitted heat from the face, is limited in availability compared to face imagery in the visible spectrum. To help address this scarcity of thermal face imagery for research and algorithm development, we present the DEVCOM Army Research Laboratory Visible-Thermal Face Dataset (ARL-VTF). With over 500,000 images from 395 subjects, the ARL-VTF dataset represents, to the best of our knowledge, the largest collection of paired visible and thermal face images to date. The data was captured using a modern long wave infrared (LWIR) camera mounted alongside a stereo setup of three visible spectrum cameras. Variability in expressions, pose, and eyewear has been systematically recorded. The dataset has been curated with extensive annotations, metadata, and standardized protocols for evaluation. Furthermore, this paper presents extensive benchmark results and analysis on thermal face landmark detection and thermal-to-visible face verification by evaluating state-of-the-art models on the ARL-VTF dataset.

Overcomplete Representations Against Adversarial Videos

Adversarial robustness of deep neural networks is an extensively studied problem in the literature and various methods have been proposed to defend against adversarial images. However, only a handful of defense methods have been developed for defending against attacked videos. In this paper, we propose a novel Over-and-Under complete restoration network for Defending against adversarial videos (OUDefend). Most restoration networks adopt an encoder-decoder architecture that first shrinks spatial dimension then expands it back. This approach learns undercomplete representations, which have large receptive fields to collect global information but overlooks local details. On the other hand, overcomplete representations have opposite properties. Hence, OUDefend is designed to balance local and global features by learning those two representations. We attach OUDefend to target video recognition models as a feature restoration block and train the entire network end-to-end. Experimental results show that the defenses focusing on images may be ineffective to videos, while OUDefend enhances robustness against different types of adversarial videos, ranging from additive attacks, multiplicative attacks to physically realizable attacks.