Region-based U-net for accelerated training and enhanced precision in deep brain segmentation

Segmentation of brain structures on MRI is the primary step for further quantitative analysis of brain diseases. Manual segmentation is still considered the gold standard in terms of accuracy; however, such data is extremely time-consuming to generate. This paper presents a deep learning-based segmentation approach for 12 deep-brain structures, utilizing multiple region-based U-Nets. The brain is divided into three focal regions of interest that encompass the brainstem, the ventricular system, and the striatum. Next, three region-based U-nets are run in parallel to parcellate these larger structures into their respective four substructures. This approach not only greatly reduces the training and processing times but also significantly enhances the segmentation accuracy, compared to segmenting the entire MRI image at once. Our approach achieves remarkable accuracy with an average Dice Similarity Coefficient (DSC) of 0.901 and 95% Hausdorff Distance (HD95) of 1.155 mm. The method was compared with state-of-the-art segmentation approaches, demonstrating a high level of accuracy and robustness of the proposed method.

K-space Cold Diffusion: Learning to Reconstruct Accelerated MRI without Noise

Deep learning-based MRI reconstruction models have achieved superior performance these days. Most recently, diffusion models have shown remarkable performance in image generation, in-painting, super-resolution, image editing and more. As a generalized diffusion model, cold diffusion further broadens the scope and considers models built around arbitrary image transformations such as blurring, down-sampling, etc. In this paper, we propose a k-space cold diffusion model that performs image degradation and restoration in k-space without the need for Gaussian noise. We provide comparisons with multiple deep learning-based MRI reconstruction models and perform tests on a well-known large open-source MRI dataset. Our results show that this novel way of performing degradation can generate high-quality reconstruction images for accelerated MRI.

Attention Hybrid Variational Net for Accelerated MRI Reconstruction

The application of compressed sensing (CS)-enabled data reconstruction for accelerating magnetic resonance imaging (MRI) remains a challenging problem. This is due to the fact that the information lost in k-space from the acceleration mask makes it difficult to reconstruct an image similar to the quality of a fully sampled image. Multiple deep learning-based structures have been proposed for MRI reconstruction using CS, both in the k-space and image domains as well as using unrolled optimization methods. However, the drawback of these structures is that they are not fully utilizing the information from both domains (k-space and image). Herein, we propose a deep learning-based attention hybrid variational network that performs learning in both the k-space and image domain. We evaluate our method on a well-known open-source MRI dataset and a clinical MRI dataset of patients diagnosed with strokes from our institution to demonstrate the performance of our network. In addition to quantitative evaluation, we undertook a blinded comparison of image quality across networks performed by a subspecialty trained radiologist. Overall, we demonstrate that our network achieves a superior performance among others under multiple reconstruction tasks.

Importance Sparsification for Sinkhorn Algorithm

Sinkhorn algorithm has been used pervasively to approximate the solution to optimal transport (OT) and unbalanced optimal transport (UOT) problems. However, its practical application is limited due to the high computational complexity. To alleviate the computational burden, we propose a novel importance sparsification method, called Spar-Sink, to efficiently approximate entropy-regularized OT and UOT solutions. Specifically, our method employs natural upper bounds for unknown optimal transport plans to establish effective sampling probabilities, and constructs a sparse kernel matrix to accelerate Sinkhorn iterations, reducing the computational cost of each iteration from $O(n^2)$ to $\widetilde{O}(n)$ for a sample of size $n$. Theoretically, we show the proposed estimators for the regularized OT and UOT problems are consistent under mild regularity conditions. Experiments on various synthetic data demonstrate Spar-Sink outperforms mainstream competitors in terms of both estimation error and speed. A real-world echocardiogram data analysis shows Spar-Sink can effectively estimate and visualize cardiac cycles, from which one can identify heart failure and arrhythmia. To evaluate the numerical accuracy of cardiac cycle prediction, we consider the task of predicting the end-systole time point using the end-diastole one. Results show Spar-Sink performs as well as the classical Sinkhorn algorithm, requiring significantly less computational time.

Efficient Approximation of Gromov-Wasserstein Distance using Importance Sparsification

As a valid metric of metric-measure spaces, Gromov-Wasserstein (GW) distance has shown the potential for the matching problems of structured data like point clouds and graphs. However, its application in practice is limited due to its high computational complexity. To overcome this challenge, we propose a novel importance sparsification method, called Spar-GW, to approximate GW distance efficiently. In particular, instead of considering a dense coupling matrix, our method leverages a simple but effective sampling strategy to construct a sparse coupling matrix and update it with few computations. We demonstrate that the proposed Spar-GW method is applicable to the GW distance with arbitrary ground cost, and it reduces the complexity from $\mathcal{O}(n^4)$ to $\mathcal{O}(n^{2+\delta})$ for an arbitrary small $\delta>0$. In addition, this method can be extended to approximate the variants of GW distance, including the entropic GW distance, the fused GW distance, and the unbalanced GW distance. Experiments show the superiority of our Spar-GW to state-of-the-art methods in both synthetic and real-world tasks.

A Single Image based Head Pose Estimation Method with Spherical Parameterization

Head pose estimation plays a vital role in various applications, e.g., driverassistance systems, human-computer interaction, virtual reality technology, and so on. We propose a novel geometry based algorithm for accurately estimating the head pose from a single 2D face image at a very low computational cost. Specifically, the rectangular coordinates of only four non-coplanar feature points from a predefined 3D facial model as well as the corresponding ones automatically/ manually extracted from a 2D face image are first normalized to exclude the effect of external factors (i.e., scale factor and translation parameters). Then, the four normalized 3D feature points are represented in spherical coordinates with reference to the uniquely determined sphere by themselves. Due to the spherical parameterization, the coordinates of feature points can then be morphed along all the three directions in the rectangular coordinates effectively. Finally, the rotation matrix indicating the head pose is obtained by minimizing the Euclidean distance between the normalized 2D feature points and the 2D re-projections of morphed 3D feature points. Comprehensive experimental results over two popular databases, i.e., Pointing'04 and Biwi Kinect, demonstrate that the proposed algorithm can estimate head poses with higher accuracy and lower run time than state-of-the-art geometry based methods. Even compared with start-of-the-art learning based methods or geometry based methods with additional depth information, our algorithm still produces comparable performance.