Khayyam Challenge (PersianMMLU): Is Your LLM Truly Wise to The Persian Language?

Evaluating Large Language Models (LLMs) is challenging due to their generative nature, necessitating precise evaluation methodologies. Additionally, non-English LLM evaluation lags behind English, resulting in the absence or weakness of LLMs for many languages. In response to this necessity, we introduce Khayyam Challenge (also known as PersianMMLU), a meticulously curated collection comprising 20,192 four-choice questions sourced from 38 diverse tasks extracted from Persian examinations, spanning a wide spectrum of subjects, complexities, and ages. The primary objective of the Khayyam Challenge is to facilitate the rigorous evaluation of LLMs that support the Persian language. Distinctive features of the Khayyam Challenge are (i) its comprehensive coverage of various topics, including literary comprehension, mathematics, sciences, logic, intelligence testing, etc., aimed at assessing different facets of LLMs such as language comprehension, reasoning, and information retrieval across various educational stages, from lower primary school to upper secondary school (ii) its inclusion of rich metadata such as human response rates, difficulty levels, and descriptive answers (iii) its utilization of new data to avoid data contamination issues prevalent in existing frameworks (iv) its use of original, non-translated data tailored for Persian speakers, ensuring the framework is free from translation challenges and errors while encompassing cultural nuances (v) its inherent scalability for future data updates and evaluations without requiring special human effort. Previous works lacked an evaluation framework that combined all of these features into a single comprehensive benchmark. Furthermore, we evaluate a wide range of existing LLMs that support the Persian language, with statistical analyses and interpretations of their outputs.

Language Plays a Pivotal Role in the Object-Attribute Compositional Generalization of CLIP

Vision-language models, such as CLIP, have shown promising Out-of-Distribution (OoD) generalization under various types of distribution shifts. Recent studies attempted to investigate the leading cause of this capability. In this work, we follow the same path, but focus on a specific type of OoD data - images with novel compositions of attribute-object pairs - and study whether such models can successfully classify those images into composition classes. We carefully designed an authentic image test dataset called ImageNet-AO, consisting of attributes for objects that are unlikely encountered in the CLIP training sets. We found that CLIPs trained with large datasets such as OpenAI CLIP, LAION-400M, and LAION-2B show orders-of-magnitude improvement in effective compositional OoD generalization compared to both supervised models and CLIPs trained with smaller datasets, such as CC-12M and YFCC-15M. Our results provide evidence that the scale and diversity of training data and language supervision play a key role in unlocking the compositional generalization abilities of vision-language models.

Decompose-and-Compose: A Compositional Approach to Mitigating Spurious Correlation

While standard Empirical Risk Minimization (ERM) training is proven effective for image classification on in-distribution data, it fails to perform well on out-of-distribution samples. One of the main sources of distribution shift for image classification is the compositional nature of images. Specifically, in addition to the main object or component(s) determining the label, some other image components usually exist, which may lead to the shift of input distribution between train and test environments. More importantly, these components may have spurious correlations with the label. To address this issue, we propose Decompose-and-Compose (DaC), which improves robustness to correlation shift by a compositional approach based on combining elements of images. Based on our observations, models trained with ERM usually highly attend to either the causal components or the components having a high spurious correlation with the label (especially in datapoints on which models have a high confidence). In fact, according to the amount of spurious correlation and the easiness of classification based on the causal or non-causal components, the model usually attends to one of these more (on samples with high confidence). Following this, we first try to identify the causal components of images using class activation maps of models trained with ERM. Afterward, we intervene on images by combining them and retraining the model on the augmented data, including the counterfactual ones. Along with its high interpretability, this work proposes a group-balancing method by intervening on images without requiring group labels or information regarding the spurious features during training. The method has an overall better worst group accuracy compared to previous methods with the same amount of supervision on the group labels in correlation shift.

Annotation-Free Group Robustness via Loss-Based Resampling

It is well-known that training neural networks for image classification with empirical risk minimization (ERM) makes them vulnerable to relying on spurious attributes instead of causal ones for prediction. Previously, deep feature re-weighting (DFR) has proposed retraining the last layer of a pre-trained network on balanced data concerning spurious attributes, making it robust to spurious correlation. However, spurious attribute annotations are not always available. In order to provide group robustness without such annotations, we propose a new method, called loss-based feature re-weighting (LFR), in which we infer a grouping of the data by evaluating an ERM-pre-trained model on a small left-out split of the training data. Then, a balanced number of samples is chosen by selecting high-loss samples from misclassified data points and low-loss samples from correctly-classified ones. Finally, we retrain the last layer on the selected balanced groups to make the model robust to spurious correlation. For a complete assessment, we evaluate LFR on various versions of Waterbirds and CelebA datasets with different spurious correlations, which is a novel technique for observing the model's performance in a wide range of spuriosity rates. While LFR is extremely fast and straightforward, it outperforms the previous methods that do not assume group label availability, as well as the DFR with group annotations provided, in cases of high spurious correlation in the training data.

A Distinct Unsupervised Reference Model From The Environment Helps Continual Learning

The existing continual learning methods are mainly focused on fully-supervised scenarios and are still not able to take advantage of unlabeled data available in the environment. Some recent works tried to investigate semi-supervised continual learning (SSCL) settings in which the unlabeled data are available, but it is only from the same distribution as the labeled data. This assumption is still not general enough for real-world applications and restricts the utilization of unsupervised data. In this work, we introduce Open-Set Semi-Supervised Continual Learning (OSSCL), a more realistic semi-supervised continual learning setting in which out-of-distribution (OoD) unlabeled samples in the environment are assumed to coexist with the in-distribution ones. Under this configuration, we present a model with two distinct parts: (i) the reference network captures general-purpose and task-agnostic knowledge in the environment by using a broad spectrum of unlabeled samples, (ii) the learner network is designed to learn task-specific representations by exploiting supervised samples. The reference model both provides a pivotal representation space and also segregates unlabeled data to exploit them more efficiently. By performing a diverse range of experiments, we show the superior performance of our model compared with other competitors and prove the effectiveness of each component of the proposed model.

BIMRL: Brain Inspired Meta Reinforcement Learning

Sample efficiency has been a key issue in reinforcement learning (RL). An efficient agent must be able to leverage its prior experiences to quickly adapt to similar, but new tasks and situations. Meta-RL is one attempt at formalizing and addressing this issue. Inspired by recent progress in meta-RL, we introduce BIMRL, a novel multi-layer architecture along with a novel brain-inspired memory module that will help agents quickly adapt to new tasks within a few episodes. We also utilize this memory module to design a novel intrinsic reward that will guide the agent's exploration. Our architecture is inspired by findings in cognitive neuroscience and is compatible with the knowledge on connectivity and functionality of different regions in the brain. We empirically validate the effectiveness of our proposed method by competing with or surpassing the performance of some strong baselines on multiple MiniGrid environments.

SCGG: A Deep Structure-Conditioned Graph Generative Model

Deep learning-based graph generation approaches have remarkable capacities for graph data modeling, allowing them to solve a wide range of real-world problems. Making these methods able to consider different conditions during the generation procedure even increases their effectiveness by empowering them to generate new graph samples that meet the desired criteria. This paper presents a conditional deep graph generation method called SCGG that considers a particular type of structural conditions. Specifically, our proposed SCGG model takes an initial subgraph and autoregressively generates new nodes and their corresponding edges on top of the given conditioning substructure. The architecture of SCGG consists of a graph representation learning network and an autoregressive generative model, which is trained end-to-end. Using this model, we can address graph completion, a rampant and inherently difficult problem of recovering missing nodes and their associated edges of partially observed graphs. Experimental results on both synthetic and real-world datasets demonstrate the superiority of our method compared with state-of-the-art baselines.

Isoform Function Prediction Using Deep Neural Network

Isoforms are mRNAs produced from the same gene site in the phenomenon called Alternative Splicing. Studies have shown that more than 95% of human multi-exon genes have undergone alternative splicing. Although there are few changes in mRNA sequence, They may have a systematic effect on cell function and regulation. It is widely reported that isoforms of a gene have distinct or even contrasting functions. Most studies have shown that alternative splicing plays a significant role in human health and disease. Despite the wide range of gene function studies, there is little information about isoforms' functionalities. Recently, some computational methods based on Multiple Instance Learning have been proposed to predict isoform function using gene function and gene expression profile. However, their performance is not desirable due to the lack of labeled training data. In addition, probabilistic models such as Conditional Random Field (CRF) have been used to model the relation between isoforms. This project uses all the data and valuable information such as isoform sequences, expression profiles, and gene ontology graphs and proposes a comprehensive model based on Deep Neural Networks. The UniProt Gene Ontology (GO) database is used as a standard reference for gene functions. The NCBI RefSeq database is used for extracting gene and isoform sequences, and the NCBI SRA database is used for expression profile data. Metrics such as Receiver Operating Characteristic Area Under the Curve (ROC AUC) and Precision-Recall Under the Curve (PR AUC) are used to measure the prediction accuracy.

HEROHE Challenge: assessing HER2 status in breast cancer without immunohistochemistry or in situ hybridization

Breast cancer is the most common malignancy in women, being responsible for more than half a million deaths every year. As such, early and accurate diagnosis is of paramount importance. Human expertise is required to diagnose and correctly classify breast cancer and define appropriate therapy, which depends on the evaluation of the expression of different biomarkers such as the transmembrane protein receptor HER2. This evaluation requires several steps, including special techniques such as immunohistochemistry or in situ hybridization to assess HER2 status. With the goal of reducing the number of steps and human bias in diagnosis, the HEROHE Challenge was organized, as a parallel event of the 16th European Congress on Digital Pathology, aiming to automate the assessment of the HER2 status based only on hematoxylin and eosin stained tissue sample of invasive breast cancer. Methods to assess HER2 status were presented by 21 teams worldwide and the results achieved by some of the proposed methods open potential perspectives to advance the state-of-the-art.