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nnU-Net for Brain Tumor Segmentation

Nov 02, 2020
Fabian Isensee, Paul F. Jaeger, Peter M. Full, Philipp Vollmuth, Klaus H. Maier-Hein


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OR-UNet: an Optimized Robust Residual U-Net for Instrument Segmentation in Endoscopic Images

Apr 27, 2020
Fabian Isensee, Klaus H. Maier-Hein


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Robust Medical Instrument Segmentation Challenge 2019

Mar 23, 2020
Tobias Ross, Annika Reinke, Peter M. Full, Martin Wagner, Hannes Kenngott, Martin Apitz, Hellena Hempe, Diana Mindroc Filimon, Patrick Scholz, Thuy Nuong Tran, Pierangela Bruno, Pablo Arbeláez, Gui-Bin Bian, Sebastian Bodenstedt, Jon Lindström Bolmgren, Laura Bravo-Sánchez, Hua-Bin Chen, Cristina González, Dong Guo, Pål Halvorsen, Pheng-Ann Heng, Enes Hosgor, Zeng-Guang Hou, Fabian Isensee, Debesh Jha, Tingting Jiang, Yueming Jin, Kadir Kirtac, Sabrina Kletz, Stefan Leger, Zhixuan Li, Klaus H. Maier-Hein, Zhen-Liang Ni, Michael A. Riegler, Klaus Schoeffmann, Ruohua Shi, Stefanie Speidel, Michael Stenzel, Isabell Twick, Gutai Wang, Jiacheng Wang, Liansheng Wang, Lu Wang, Yujie Zhang, Yan-Jie Zhou, Lei Zhu, Manuel Wiesenfarth, Annette Kopp-Schneider, Beat P. Müller-Stich, Lena Maier-Hein

* A pre-print 

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CHAOS Challenge -- Combined (CT-MR) Healthy Abdominal Organ Segmentation

Jan 17, 2020
A. Emre Kavur, N. Sinem Gezer, Mustafa Barış, Pierre-Henri Conze, Vladimir Groza, Duc Duy Pham, Soumick Chatterjee, Philipp Ernst, Savaş Özkan, Bora Baydar, Dmitry Lachinov, Shuo Han, Josef Pauli, Fabian Isensee, Matthias Perkonigg, Rachana Sathish, Ronnie Rajan, Sinem Aslan, Debdoot Sheet, Gurbandurdy Dovletov, Oliver Speck, Andreas Nürnberger, Klaus H. Maier-Hein, Gözde Bozdağı Akar, Gözde Ünal, Oğuz Dicle, M. Alper Selver

* 10 pages, 2 figures 

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The state of the art in kidney and kidney tumor segmentation in contrast-enhanced CT imaging: Results of the KiTS19 Challenge

Dec 02, 2019
Nicholas Heller, Fabian Isensee, Klaus H. Maier-Hein, Xiaoshuai Hou, Chunmei Xie, Fengyi Li, Yang Nan, Guangrui Mu, Zhiyong Lin, Miofei Han, Guang Yao, Yaozong Gao, Yao Zhang, Yixin Wang, Feng Hou, Jiawei Yang, Guangwei Xiong, Jiang Tian, Cheng Zhong, Jun Ma, Jack Rickman, Joshua Dean, Bethany Stai, Resha Tejpaul, Makinna Oestreich, Paul Blake, Heather Kaluzniak, Shaneabbas Raza, Joel Rosenberg, Keenan Moore, Edward Walczak, Zachary Rengel, Zach Edgerton, Ranveer Vasdev, Matthew Peterson, Sean McSweeney, Sarah Peterson, Arveen Kalapara, Niranjan Sathianathen, Christopher Weight, Nikolaos Papanikolopoulos

* 18 pages, 7 figures 

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A Case for the Score: Identifying Image Anomalies using Variational Autoencoder Gradients

Nov 28, 2019
David Zimmerer, Jens Petersen, Simon A. A. Kohl, Klaus H. Maier-Hein


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Reg R-CNN: Lesion Detection and Grading under Noisy Labels

Aug 26, 2019
Gregor N. Ramien, Paul F. Jaeger, Simon A. A. Kohl, Klaus H. Maier-Hein

* 9 pages, 3 figures, 1 table 

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An attempt at beating the 3D U-Net

Aug 06, 2019
Fabian Isensee, Klaus H. Maier-Hein


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Deep Probabilistic Modeling of Glioma Growth

Jul 09, 2019
Jens Petersen, Paul F. Jäger, Fabian Isensee, Simon A. A. Kohl, Ulf Neuberger, Wolfgang Wick, Jürgen Debus, Sabine Heiland, Martin Bendszus, Philipp Kickingereder, Klaus H. Maier-Hein

* MICCAI 2019 

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A Hierarchical Probabilistic U-Net for Modeling Multi-Scale Ambiguities

May 30, 2019
Simon A. A. Kohl, Bernardino Romera-Paredes, Klaus H. Maier-Hein, Danilo Jimenez Rezende, S. M. Ali Eslami, Pushmeet Kohli, Andrew Zisserman, Olaf Ronneberger

* 25 pages, 15 figures 

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nnU-Net: Breaking the Spell on Successful Medical Image Segmentation

Apr 17, 2019
Fabian Isensee, Jens Petersen, Simon A. A. Kohl, Paul F. Jäger, Klaus H. Maier-Hein


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Combined tract segmentation and orientation mapping for bundle-specific tractography

Jan 29, 2019
Jakob Wasserthal, Peter Neher, Dusan Hirjak, Klaus H. Maier-Hein


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Context-encoding Variational Autoencoder for Unsupervised Anomaly Detection

Dec 14, 2018
David Zimmerer, Simon A. A. Kohl, Jens Petersen, Fabian Isensee, Klaus H. Maier-Hein


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Retina U-Net: Embarrassingly Simple Exploitation of Segmentation Supervision for Medical Object Detection

Nov 21, 2018
Paul F. Jaeger, Simon A. A. Kohl, Sebastian Bickelhaupt, Fabian Isensee, Tristan Anselm Kuder, Heinz-Peter Schlemmer, Klaus H. Maier-Hein


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A Probabilistic U-Net for Segmentation of Ambiguous Images

Oct 29, 2018
Simon A. A. Kohl, Bernardino Romera-Paredes, Clemens Meyer, Jeffrey De Fauw, Joseph R. Ledsam, Klaus H. Maier-Hein, S. M. Ali Eslami, Danilo Jimenez Rezende, Olaf Ronneberger

* 11 pages for the main paper, 28 pages including appendix. 5 figures in the main paper, 18 figures in total, Advances in Neural Information Processing Systems (NIPS), 2018 

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nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation

Sep 27, 2018
Fabian Isensee, Jens Petersen, Andre Klein, David Zimmerer, Paul F. Jaeger, Simon Kohl, Jakob Wasserthal, Gregor Koehler, Tobias Norajitra, Sebastian Wirkert, Klaus H. Maier-Hein


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No New-Net

Sep 27, 2018
Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein


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TractSeg - Fast and accurate white matter tract segmentation

Aug 20, 2018
Jakob Wasserthal, Peter Neher, Klaus H. Maier-Hein

* Wasserthal, J., Neher, P., Maier-Hein, K.H., 2018. TractSeg - Fast and accurate white matter tract segmentation. NeuroImage 

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Domain Adaptation for Deviating Acquisition Protocols in CNN-based Lesion Classification on Diffusion-Weighted MR Images

Jul 17, 2018
Jennifer Kamphenkel, Paul F. Jaeger, Sebastian Bickelhaupt, Frederik Bernd Laun, Wolfgang Lederer, Heidi Daniel, Tristan Anselm Kuder, Stefan Delorme, Heinz-Peter Schlemmer, Franziska Koenig, Klaus H. Maier-Hein

* accepted at the MICCAI workshop on Breast Image Analysis 

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Tract orientation mapping for bundle-specific tractography

Jun 14, 2018
Jakob Wasserthal, Peter F. Neher, Klaus H. Maier-Hein

* Accepted at MICCAI 2018 

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Towards whole-body CT Bone Segmentation

Apr 03, 2018
André Klein, Jan Warszawski, Jens Hillengaß, Klaus H. Maier-Hein

* Accepted conference paper at BVM 2018 

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Brain Tumor Segmentation and Radiomics Survival Prediction: Contribution to the BRATS 2017 Challenge

Feb 28, 2018
Fabian Isensee, Philipp Kickingereder, Wolfgang Wick, Martin Bendszus, Klaus H. Maier-Hein


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Automatic Cardiac Disease Assessment on cine-MRI via Time-Series Segmentation and Domain Specific Features

Jan 25, 2018
Fabian Isensee, Paul Jaeger, Peter M. Full, Ivo Wolf, Sandy Engelhardt, Klaus H. Maier-Hein

* To appear in the STACOM 2017 proceedings 

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Revealing Hidden Potentials of the q-Space Signal in Breast Cancer

May 22, 2017
Paul Jaeger, Sebastian Bickelhaupt, Frederik Bernd Laun, Wolfgang Lederer, Daniel Heidi, Tristan Anselm Kuder, Daniel Paech, David Bonekamp, Alexander Radbruch, Stefan Delorme, Heinz-Peter Schlemmer, Franziska Steudle, Klaus H. Maier-Hein

* Accepted conference paper at MICCAI 2017 

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Direct White Matter Bundle Segmentation using Stacked U-Nets

Mar 06, 2017
Jakob Wasserthal, Peter F. Neher, Fabian Isensee, Klaus H. Maier-Hein


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