E2Former-V2: On-the-Fly Equivariant Attention with Linear Activation Memory

Equivariant Graph Neural Networks (EGNNs) have become a widely used approach for modeling 3D atomistic systems. However, mainstream architectures face critical scalability bottlenecks due to the explicit construction of geometric features or dense tensor products on \textit{every} edge. To overcome this, we introduce \textbf{E2Former-V2}, a scalable architecture that integrates algebraic sparsity with hardware-aware execution. We first propose \textbf{E}quivariant \textbf{A}xis-\textbf{A}ligned \textbf{S}parsification (EAAS). EAAS builds on Wigner-$6j$ convolution by exploiting an $\mathrm{SO}(3) \rightarrow \mathrm{SO}(2)$ change of basis to transform computationally expensive dense tensor contractions into efficient, sparse parity re-indexing operations. Building on this representation, we introduce \textbf{On-the-Fly Equivariant Attention}, a fully node-centric mechanism implemented via a custom fused Triton kernel. By eliminating materialized edge tensors and maximizing SRAM utilization, our kernel achieves a \textbf{20$\times$ improvement in TFLOPS} compared to standard implementations. Extensive experiments on the SPICE and OMol25 datasets demonstrate that E2Former-V2 maintains comparable predictive performance while notably accelerating inference. This work demonstrates that large equivariant transformers can be trained efficiently using widely accessible GPU platforms. The code is avalible at https://github.com/IQuestLab/UBio-MolFM/tree/e2formerv2.

Uni-Parser Technical Report

This technical report introduces Uni-Parser, an industrial-grade document parsing engine tailored for scientific literature and patents, delivering high throughput, robust accuracy, and cost efficiency. Unlike pipeline-based document parsing methods, Uni-Parser employs a modular, loosely coupled multi-expert architecture that preserves fine-grained cross-modal alignments across text, equations, tables, figures, and chemical structures, while remaining easily extensible to emerging modalities. The system incorporates adaptive GPU load balancing, distributed inference, dynamic module orchestration, and configurable modes that support either holistic or modality-specific parsing. Optimized for large-scale cloud deployment, Uni-Parser achieves a processing rate of up to 20 PDF pages per second on 8 x NVIDIA RTX 4090D GPUs, enabling cost-efficient inference across billions of pages. This level of scalability facilitates a broad spectrum of downstream applications, ranging from literature retrieval and summarization to the extraction of chemical structures, reaction schemes, and bioactivity data, as well as the curation of large-scale corpora for training next-generation large language models and AI4Science models.

Hard Negative Sample-Augmented DPO Post-Training for Small Language Models

Large language models (LLMs) continue to struggle with mathematical reasoning, and common post-training pipelines often reduce each generated solution to a binary outcome: correct or incorrect. This perspective is limiting in practice, as failures in chain-of-thought (CoT) reasoning are frequently structured; solutions may appear convincing while containing subtle logical, algebraic, or numerical flaws. Meanwhile, reinforcement learning from human feedback (RLHF) variants that rely on large reward models or LLM-as-a-judge signals are often expensive, difficult to scale, and unstable to iterate. We propose a lightweight and pragmatic post-training pipeline that targets such structured errors under realistic compute budgets. Starting from supervised fine-tuning (SFT) on MetaMathQA-style CoT data, we introduce a compact MathVerifier that decomposes a candidate solution into a six-dimensional error profile and aggregates it into interpretable wrongness and absurdity scores. These verifier signals serve two roles: (i) mining hard negatives that are near-correct yet structurally flawed, and (ii) defining per-sample importance weights that emphasize the most informative preference pairs. We integrate both into an offline Direct Preference Optimization (DPO) objective via a verifier-guided weighted formulation. Experiments on a 1.5B-parameter Qwen2.5 model show that verifier-guided, weighted DPO yields more targeted improvements than vanilla SFT and unweighted DPO, particularly on problems where solutions are numerically close to correct but logically inconsistent, while avoiding the overhead of training large reward models or relying on external judges.

MoQAE: Mixed-Precision Quantization for Long-Context LLM Inference via Mixture of Quantization-Aware Experts

One of the primary challenges in optimizing large language models (LLMs) for long-context inference lies in the high memory consumption of the Key-Value (KV) cache. Existing approaches, such as quantization, have demonstrated promising results in reducing memory usage. However, current quantization methods cannot take both effectiveness and efficiency into account. In this paper, we propose MoQAE, a novel mixed-precision quantization method via mixture of quantization-aware experts. First, we view different quantization bit-width configurations as experts and use the traditional mixture of experts (MoE) method to select the optimal configuration. To avoid the inefficiency caused by inputting tokens one by one into the router in the traditional MoE method, we input the tokens into the router chunk by chunk. Second, we design a lightweight router-only fine-tuning process to train MoQAE with a comprehensive loss to learn the trade-off between model accuracy and memory usage. Finally, we introduce a routing freezing (RF) and a routing sharing (RS) mechanism to further reduce the inference overhead. Extensive experiments on multiple benchmark datasets demonstrate that our method outperforms state-of-the-art KV cache quantization approaches in both efficiency and effectiveness.